Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2785 and GFF2786 are separated by 111 nucleotides GFF2786 and GFF2787 are separated by 105 nucleotides GFF2787 and GFF2788 are separated by 20 nucleotides GFF2788 and GFF2789 are separated by 216 nucleotides
GFF2785 - Response regulator receiver, at 385,117 to 385,569
GFF2785
GFF2786 - putative lipoprotein, at 385,681 to 385,992
GFF2786
GFF2787 - Putative periplasmic protein, at 386,098 to 386,541
GFF2787
GFF2788 - UPF0337 protein yjbJ, at 386,562 to 386,801
GFF2788
GFF2789 - DNA-binding response regulator, LuxR family, at 387,018 to 387,650
GFF2789
Position (kb) 386
387 Strain fitness (log2 ratio) -2
-1
0
1 at 385.118 kb on + strand at 385.118 kb on + strand at 385.118 kb on + strand at 385.119 kb on - strand at 385.259 kb on + strand, within GFF2785 at 385.259 kb on + strand, within GFF2785 at 385.259 kb on + strand, within GFF2785 at 385.472 kb on + strand, within GFF2785 at 385.473 kb on - strand, within GFF2785 at 385.473 kb on - strand, within GFF2785 at 385.499 kb on + strand, within GFF2785 at 385.499 kb on + strand, within GFF2785 at 385.499 kb on + strand, within GFF2785 at 385.500 kb on - strand, within GFF2785 at 385.563 kb on + strand at 385.563 kb on + strand at 385.563 kb on + strand at 385.563 kb on + strand at 385.563 kb on + strand at 385.564 kb on - strand at 385.564 kb on - strand at 385.564 kb on - strand at 385.564 kb on - strand at 385.564 kb on - strand at 385.569 kb on + strand at 385.570 kb on - strand at 385.570 kb on - strand at 385.570 kb on - strand at 385.646 kb on - strand at 385.657 kb on + strand at 385.658 kb on - strand at 385.658 kb on - strand at 385.850 kb on + strand, within GFF2786 at 385.892 kb on + strand, within GFF2786 at 385.892 kb on + strand, within GFF2786 at 385.893 kb on - strand, within GFF2786 at 385.893 kb on - strand, within GFF2786 at 386.357 kb on + strand, within GFF2787 at 386.829 kb on + strand at 386.830 kb on - strand at 386.905 kb on + strand at 386.906 kb on - strand at 386.906 kb on - strand at 386.936 kb on + strand at 386.937 kb on - strand at 386.937 kb on - strand at 386.937 kb on - strand at 386.974 kb on - strand at 387.282 kb on + strand, within GFF2789 at 387.283 kb on - strand, within GFF2789 at 387.388 kb on - strand, within GFF2789 at 387.388 kb on - strand, within GFF2789
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 385,118 + -0.5 385,118 + -0.7 385,118 + +0.6 385,119 - +0.0 385,259 + GFF2785 0.31 -0.8 385,259 + GFF2785 0.31 -1.2 385,259 + GFF2785 0.31 -1.8 385,472 + GFF2785 0.78 -1.4 385,473 - GFF2785 0.79 -1.3 385,473 - GFF2785 0.79 -1.4 385,499 + GFF2785 0.84 -0.7 385,499 + GFF2785 0.84 -0.6 385,499 + GFF2785 0.84 -0.1 385,500 - GFF2785 0.85 -1.1 385,563 + +0.1 385,563 + +0.2 385,563 + +0.7 385,563 + +0.8 385,563 + -0.4 385,564 - +1.1 385,564 - +0.1 385,564 - -0.1 385,564 - +0.8 385,564 - +0.2 385,569 + -0.2 385,570 - -1.3 385,570 - +1.0 385,570 - +0.8 385,646 - -0.2 385,657 + +0.1 385,658 - +0.0 385,658 - -0.2 385,850 + GFF2786 0.54 -0.4 385,892 + GFF2786 0.68 -0.2 385,892 + GFF2786 0.68 +0.5 385,893 - GFF2786 0.68 +0.0 385,893 - GFF2786 0.68 +0.5 386,357 + GFF2787 0.58 +0.7 386,829 + -0.2 386,830 - -0.2 386,905 + +0.0 386,906 - +0.3 386,906 - +0.3 386,936 + -0.5 386,937 - -0.4 386,937 - +0.0 386,937 - +1.4 386,974 - -0.3 387,282 + GFF2789 0.42 +0.8 387,283 - GFF2789 0.42 -0.6 387,388 - GFF2789 0.58 +1.7 387,388 - GFF2789 0.58 +0.2
Or see this region's nucleotide sequence