Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2738 and GFF2739 are separated by 17 nucleotides GFF2739 and GFF2740 are separated by 108 nucleotides
GFF2738 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 334,400 to 335,740
GFF2738
GFF2739 - lipoprotein, putative, at 335,758 to 336,564
GFF2739
GFF2740 - Ammonia monooxygenase, at 336,673 to 337,695
GFF2740
Position (kb) 335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 334.772 kb on + strand, within GFF2738 at 334.773 kb on - strand, within GFF2738 at 334.805 kb on - strand, within GFF2738 at 334.889 kb on + strand, within GFF2738 at 334.955 kb on + strand, within GFF2738 at 334.955 kb on + strand, within GFF2738 at 334.956 kb on - strand, within GFF2738 at 334.956 kb on - strand, within GFF2738 at 334.956 kb on - strand, within GFF2738 at 335.087 kb on + strand, within GFF2738 at 335.087 kb on + strand, within GFF2738 at 335.088 kb on - strand, within GFF2738 at 335.105 kb on + strand, within GFF2738 at 335.210 kb on + strand, within GFF2738 at 335.210 kb on + strand, within GFF2738 at 335.211 kb on - strand, within GFF2738 at 335.304 kb on - strand, within GFF2738 at 335.304 kb on - strand, within GFF2738 at 335.366 kb on + strand, within GFF2738 at 335.367 kb on - strand, within GFF2738 at 335.373 kb on - strand, within GFF2738 at 335.373 kb on - strand, within GFF2738 at 335.373 kb on - strand, within GFF2738 at 335.669 kb on + strand at 335.670 kb on - strand at 335.670 kb on - strand at 335.670 kb on - strand at 335.738 kb on + strand at 335.739 kb on - strand at 335.739 kb on - strand at 336.233 kb on + strand, within GFF2739 at 336.234 kb on - strand, within GFF2739 at 336.572 kb on + strand at 336.575 kb on + strand at 336.576 kb on - strand at 336.576 kb on - strand at 336.576 kb on - strand at 336.576 kb on - strand at 336.844 kb on + strand, within GFF2740 at 336.844 kb on + strand, within GFF2740 at 336.844 kb on + strand, within GFF2740 at 336.844 kb on + strand, within GFF2740 at 336.845 kb on - strand, within GFF2740 at 337.009 kb on + strand, within GFF2740 at 337.009 kb on + strand, within GFF2740 at 337.009 kb on + strand, within GFF2740 at 337.010 kb on - strand, within GFF2740 at 337.010 kb on - strand, within GFF2740 at 337.010 kb on - strand, within GFF2740
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 334,772 + GFF2738 0.28 -1.1 334,773 - GFF2738 0.28 -0.8 334,805 - GFF2738 0.30 -2.1 334,889 + GFF2738 0.36 -1.0 334,955 + GFF2738 0.41 -1.7 334,955 + GFF2738 0.41 -0.6 334,956 - GFF2738 0.41 -2.5 334,956 - GFF2738 0.41 -1.5 334,956 - GFF2738 0.41 -0.4 335,087 + GFF2738 0.51 -1.2 335,087 + GFF2738 0.51 -0.1 335,088 - GFF2738 0.51 -1.5 335,105 + GFF2738 0.53 +0.1 335,210 + GFF2738 0.60 -0.6 335,210 + GFF2738 0.60 -1.2 335,211 - GFF2738 0.60 -1.3 335,304 - GFF2738 0.67 -1.5 335,304 - GFF2738 0.67 -0.8 335,366 + GFF2738 0.72 -1.9 335,367 - GFF2738 0.72 -2.9 335,373 - GFF2738 0.73 -1.4 335,373 - GFF2738 0.73 -0.5 335,373 - GFF2738 0.73 -1.2 335,669 + -1.3 335,670 - -1.9 335,670 - +0.5 335,670 - -1.1 335,738 + +0.5 335,739 - -0.3 335,739 - -0.7 336,233 + GFF2739 0.59 +2.3 336,234 - GFF2739 0.59 +0.4 336,572 + +1.5 336,575 + +0.2 336,576 - +1.0 336,576 - -0.9 336,576 - -0.7 336,576 - -1.5 336,844 + GFF2740 0.17 +1.0 336,844 + GFF2740 0.17 +0.0 336,844 + GFF2740 0.17 +0.4 336,844 + GFF2740 0.17 +0.0 336,845 - GFF2740 0.17 +0.3 337,009 + GFF2740 0.33 +0.2 337,009 + GFF2740 0.33 +0.1 337,009 + GFF2740 0.33 -0.0 337,010 - GFF2740 0.33 +0.1 337,010 - GFF2740 0.33 -0.9 337,010 - GFF2740 0.33 -0.3
Or see this region's nucleotide sequence