Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2727 and GFF2728 are separated by 10 nucleotides GFF2728 and GFF2729 are separated by 200 nucleotides GFF2729 and GFF2730 are separated by 112 nucleotides
GFF2727 - JmjC domain protein, at 319,537 to 320,595
GFF2727
GFF2728 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 320,606 to 323,590
GFF2728
GFF2729 - hypothetical protein, at 323,791 to 324,093
GFF2729
GFF2730 - Biotin carboxylase (EC 6.3.4.14), at 324,206 to 326,035
GFF2730
Position (kb) 320
321
322
323
324 Strain fitness (log2 ratio) -1
0
1 at 319.885 kb on + strand, within GFF2727 at 319.885 kb on + strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 319.886 kb on - strand, within GFF2727 at 320.029 kb on + strand, within GFF2727 at 320.029 kb on + strand, within GFF2727 at 320.029 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.116 kb on + strand, within GFF2727 at 320.117 kb on - strand, within GFF2727 at 320.117 kb on - strand, within GFF2727 at 320.117 kb on - strand, within GFF2727 at 320.119 kb on + strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.120 kb on - strand, within GFF2727 at 320.356 kb on + strand, within GFF2727 at 320.357 kb on - strand, within GFF2727 at 320.357 kb on - strand, within GFF2727 at 320.374 kb on + strand, within GFF2727 at 320.374 kb on + strand, within GFF2727 at 320.375 kb on - strand, within GFF2727 at 320.375 kb on - strand, within GFF2727 at 320.560 kb on + strand at 320.561 kb on - strand at 320.561 kb on - strand at 320.561 kb on - strand at 320.715 kb on + strand at 320.715 kb on + strand at 320.908 kb on - strand, within GFF2728 at 321.251 kb on + strand, within GFF2728 at 321.251 kb on + strand, within GFF2728 at 321.251 kb on + strand, within GFF2728 at 321.333 kb on + strand, within GFF2728 at 321.334 kb on - strand, within GFF2728 at 321.465 kb on + strand, within GFF2728 at 321.466 kb on - strand, within GFF2728 at 321.918 kb on + strand, within GFF2728 at 321.918 kb on + strand, within GFF2728 at 321.919 kb on - strand, within GFF2728 at 322.194 kb on + strand, within GFF2728 at 322.365 kb on + strand, within GFF2728 at 322.392 kb on + strand, within GFF2728 at 322.393 kb on - strand, within GFF2728 at 322.587 kb on + strand, within GFF2728 at 322.587 kb on + strand, within GFF2728 at 322.587 kb on + strand, within GFF2728 at 322.587 kb on + strand, within GFF2728 at 322.588 kb on - strand, within GFF2728 at 323.073 kb on + strand, within GFF2728 at 323.073 kb on + strand, within GFF2728 at 323.073 kb on + strand, within GFF2728 at 323.074 kb on - strand, within GFF2728 at 323.074 kb on - strand, within GFF2728 at 323.074 kb on - strand, within GFF2728 at 323.074 kb on - strand, within GFF2728 at 323.565 kb on + strand at 323.565 kb on + strand at 323.565 kb on + strand at 323.565 kb on + strand at 323.565 kb on + strand at 323.566 kb on - strand at 323.566 kb on - strand at 323.566 kb on - strand at 323.566 kb on - strand at 323.566 kb on - strand at 323.603 kb on + strand at 323.603 kb on + strand at 323.603 kb on + strand at 323.604 kb on - strand at 323.604 kb on - strand at 323.604 kb on - strand at 323.640 kb on - strand at 323.663 kb on - strand at 323.687 kb on + strand at 323.687 kb on + strand at 323.687 kb on + strand at 323.687 kb on + strand at 323.688 kb on - strand at 323.688 kb on - strand at 323.695 kb on + strand at 323.695 kb on + strand at 323.695 kb on + strand at 323.695 kb on + strand at 323.695 kb on + strand at 323.818 kb on + strand at 323.818 kb on + strand at 323.818 kb on + strand at 323.819 kb on - strand at 323.819 kb on - strand at 323.819 kb on - strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 319,885 + GFF2727 0.33 +1.1 319,885 + GFF2727 0.33 -0.2 319,886 - GFF2727 0.33 -0.1 319,886 - GFF2727 0.33 +1.7 319,886 - GFF2727 0.33 -0.1 319,886 - GFF2727 0.33 +0.7 320,029 + GFF2727 0.46 -0.3 320,029 + GFF2727 0.46 -0.6 320,029 + GFF2727 0.46 +0.3 320,116 + GFF2727 0.55 -0.0 320,116 + GFF2727 0.55 -0.3 320,116 + GFF2727 0.55 +0.5 320,116 + GFF2727 0.55 -0.4 320,117 - GFF2727 0.55 -0.2 320,117 - GFF2727 0.55 -0.3 320,117 - GFF2727 0.55 -0.9 320,119 + GFF2727 0.55 -1.0 320,120 - GFF2727 0.55 +0.3 320,120 - GFF2727 0.55 -0.4 320,120 - GFF2727 0.55 -0.4 320,120 - GFF2727 0.55 -0.7 320,356 + GFF2727 0.77 +0.8 320,357 - GFF2727 0.77 +0.2 320,357 - GFF2727 0.77 -0.3 320,374 + GFF2727 0.79 +0.3 320,374 + GFF2727 0.79 +0.5 320,375 - GFF2727 0.79 +0.2 320,375 - GFF2727 0.79 -0.5 320,560 + +0.8 320,561 - -0.2 320,561 - -0.0 320,561 - -0.6 320,715 + +0.3 320,715 + -0.9 320,908 - GFF2728 0.10 +0.7 321,251 + GFF2728 0.22 +0.7 321,251 + GFF2728 0.22 -0.3 321,251 + GFF2728 0.22 -0.0 321,333 + GFF2728 0.24 -0.1 321,334 - GFF2728 0.24 +0.3 321,465 + GFF2728 0.29 -0.0 321,466 - GFF2728 0.29 +1.3 321,918 + GFF2728 0.44 -0.0 321,918 + GFF2728 0.44 -0.1 321,919 - GFF2728 0.44 +0.6 322,194 + GFF2728 0.53 +0.1 322,365 + GFF2728 0.59 -0.0 322,392 + GFF2728 0.60 +0.1 322,393 - GFF2728 0.60 +0.3 322,587 + GFF2728 0.66 +1.3 322,587 + GFF2728 0.66 +0.4 322,587 + GFF2728 0.66 -0.7 322,587 + GFF2728 0.66 +0.6 322,588 - GFF2728 0.66 -0.2 323,073 + GFF2728 0.83 -0.1 323,073 + GFF2728 0.83 +0.3 323,073 + GFF2728 0.83 +0.1 323,074 - GFF2728 0.83 +0.6 323,074 - GFF2728 0.83 +0.3 323,074 - GFF2728 0.83 +1.0 323,074 - GFF2728 0.83 -1.2 323,565 + -0.1 323,565 + -0.3 323,565 + +1.0 323,565 + +0.1 323,565 + +0.8 323,566 - -0.1 323,566 - +1.3 323,566 - +1.4 323,566 - -0.7 323,566 - -0.4 323,603 + +0.4 323,603 + -0.2 323,603 + -0.2 323,604 - +0.0 323,604 - +0.1 323,604 - +0.4 323,640 - +0.6 323,663 - +0.0 323,687 + +0.2 323,687 + +1.7 323,687 + +0.5 323,687 + -0.2 323,688 - -0.8 323,688 - +0.5 323,695 + -0.7 323,695 + -0.2 323,695 + +0.8 323,695 + +1.7 323,695 + -0.4 323,818 + +0.2 323,818 + +0.0 323,818 + +0.4 323,819 - +1.3 323,819 - -0.1 323,819 - +0.6 324,088 + +0.3 324,088 + +1.0 324,088 + +0.4 324,088 + -0.6 324,088 + -0.2 324,088 + +0.4 324,088 + -0.0 324,089 - -0.0 324,089 - -0.5 324,089 - -0.3 324,089 - -0.1 324,089 - +0.1 324,089 - -0.6 324,089 - -0.3 324,089 - +0.1
Or see this region's nucleotide sequence