Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2703 and GFF2704 are separated by 57 nucleotides GFF2704 and GFF2705 are separated by 139 nucleotides GFF2705 and GFF2706 are separated by 9 nucleotides GFF2706 and GFF2707 are separated by 13 nucleotides
GFF2703 - Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3), at 295,439 to 296,062
GFF2703
GFF2704 - putative exported protein, at 296,120 to 296,716
GFF2704
GFF2705 - hypothetical protein, at 296,856 to 297,209
GFF2705
GFF2706 - Transcriptional regulatory protein, at 297,219 to 298,142
GFF2706
GFF2707 - Putative decarboxylase, at 298,156 to 298,953
GFF2707
Position (kb) 296
297
298 Strain fitness (log2 ratio) -1
0
1 at 295.869 kb on + strand, within GFF2703 at 295.869 kb on + strand, within GFF2703 at 295.869 kb on + strand, within GFF2703 at 295.870 kb on - strand, within GFF2703 at 295.929 kb on + strand, within GFF2703 at 296.232 kb on + strand, within GFF2704 at 296.247 kb on + strand, within GFF2704 at 296.248 kb on - strand, within GFF2704 at 296.248 kb on - strand, within GFF2704 at 296.248 kb on - strand, within GFF2704 at 296.248 kb on - strand, within GFF2704 at 296.248 kb on - strand, within GFF2704 at 296.263 kb on - strand, within GFF2704 at 296.409 kb on + strand, within GFF2704 at 296.410 kb on - strand, within GFF2704 at 296.410 kb on - strand, within GFF2704 at 296.436 kb on + strand, within GFF2704 at 296.436 kb on + strand, within GFF2704 at 296.436 kb on + strand, within GFF2704 at 296.436 kb on + strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.437 kb on - strand, within GFF2704 at 296.574 kb on + strand, within GFF2704 at 296.574 kb on + strand, within GFF2704 at 296.574 kb on + strand, within GFF2704 at 296.575 kb on - strand, within GFF2704 at 296.575 kb on - strand, within GFF2704 at 296.575 kb on - strand, within GFF2704 at 296.575 kb on - strand, within GFF2704 at 296.575 kb on - strand, within GFF2704 at 296.640 kb on + strand, within GFF2704 at 296.640 kb on + strand, within GFF2704 at 296.641 kb on - strand, within GFF2704 at 296.641 kb on - strand, within GFF2704 at 296.649 kb on + strand, within GFF2704 at 296.649 kb on + strand, within GFF2704 at 296.650 kb on - strand, within GFF2704 at 296.697 kb on + strand at 296.697 kb on + strand at 296.697 kb on + strand at 296.697 kb on + strand at 296.697 kb on + strand at 296.697 kb on + strand at 296.698 kb on - strand at 296.698 kb on - strand at 296.703 kb on + strand at 296.704 kb on - strand at 296.704 kb on - strand at 296.728 kb on + strand at 296.729 kb on - strand at 297.060 kb on + strand, within GFF2705 at 297.060 kb on + strand, within GFF2705 at 297.367 kb on - strand, within GFF2706 at 297.781 kb on + strand, within GFF2706 at 297.846 kb on + strand, within GFF2706 at 297.846 kb on + strand, within GFF2706 at 297.846 kb on + strand, within GFF2706 at 297.847 kb on - strand, within GFF2706 at 297.847 kb on - strand, within GFF2706 at 297.847 kb on - strand, within GFF2706 at 297.847 kb on - strand, within GFF2706 at 297.856 kb on + strand, within GFF2706 at 297.938 kb on - strand, within GFF2706 at 297.938 kb on - strand, within GFF2706 at 297.938 kb on - strand, within GFF2706 at 298.180 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 295,869 + GFF2703 0.69 -0.7 295,869 + GFF2703 0.69 +0.1 295,869 + GFF2703 0.69 -0.3 295,870 - GFF2703 0.69 +0.2 295,929 + GFF2703 0.79 -0.2 296,232 + GFF2704 0.19 +0.6 296,247 + GFF2704 0.21 +0.2 296,248 - GFF2704 0.21 -0.7 296,248 - GFF2704 0.21 +0.3 296,248 - GFF2704 0.21 -0.1 296,248 - GFF2704 0.21 -0.1 296,248 - GFF2704 0.21 -0.1 296,263 - GFF2704 0.24 -0.4 296,409 + GFF2704 0.48 -0.1 296,410 - GFF2704 0.49 -0.0 296,410 - GFF2704 0.49 -0.2 296,436 + GFF2704 0.53 -0.1 296,436 + GFF2704 0.53 -0.6 296,436 + GFF2704 0.53 +0.1 296,436 + GFF2704 0.53 +1.4 296,437 - GFF2704 0.53 -0.0 296,437 - GFF2704 0.53 +0.2 296,437 - GFF2704 0.53 +0.1 296,437 - GFF2704 0.53 -1.1 296,437 - GFF2704 0.53 -0.3 296,437 - GFF2704 0.53 -0.3 296,437 - GFF2704 0.53 +0.7 296,437 - GFF2704 0.53 -0.2 296,574 + GFF2704 0.76 +0.0 296,574 + GFF2704 0.76 +0.5 296,574 + GFF2704 0.76 +1.1 296,575 - GFF2704 0.76 +0.5 296,575 - GFF2704 0.76 -0.6 296,575 - GFF2704 0.76 +0.4 296,575 - GFF2704 0.76 +0.1 296,575 - GFF2704 0.76 +0.2 296,640 + GFF2704 0.87 +0.3 296,640 + GFF2704 0.87 -0.0 296,641 - GFF2704 0.87 +0.1 296,641 - GFF2704 0.87 -0.5 296,649 + GFF2704 0.89 +0.3 296,649 + GFF2704 0.89 +0.3 296,650 - GFF2704 0.89 +0.4 296,697 + +1.2 296,697 + +0.1 296,697 + +0.6 296,697 + +0.3 296,697 + +0.9 296,697 + -0.7 296,698 - +0.3 296,698 - -0.4 296,703 + +0.1 296,704 - -0.6 296,704 - +0.7 296,728 + +0.6 296,729 - +0.7 297,060 + GFF2705 0.58 +0.4 297,060 + GFF2705 0.58 +0.4 297,367 - GFF2706 0.16 -0.1 297,781 + GFF2706 0.61 -0.6 297,846 + GFF2706 0.68 -0.2 297,846 + GFF2706 0.68 -0.1 297,846 + GFF2706 0.68 +1.7 297,847 - GFF2706 0.68 +0.6 297,847 - GFF2706 0.68 -0.4 297,847 - GFF2706 0.68 -0.4 297,847 - GFF2706 0.68 +0.5 297,856 + GFF2706 0.69 -0.2 297,938 - GFF2706 0.78 -0.4 297,938 - GFF2706 0.78 -0.2 297,938 - GFF2706 0.78 -0.2 298,180 + -0.3
Or see this region's nucleotide sequence