Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2699 and GFF2700 are separated by 216 nucleotides GFF2700 and GFF2701 are separated by 100 nucleotides
GFF2699 - sensor histidine kinase, at 289,376 to 291,004
GFF2699
GFF2700 - Transcriptional regulator, AsnC family, at 291,221 to 291,709
GFF2700
GFF2701 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 291,810 to 294,395
GFF2701
Position (kb) 291
292 Strain fitness (log2 ratio) -2
-1
0
1 at 290.301 kb on + strand, within GFF2699 at 290.301 kb on + strand, within GFF2699 at 290.301 kb on + strand, within GFF2699 at 290.302 kb on - strand, within GFF2699 at 290.302 kb on - strand, within GFF2699 at 290.302 kb on - strand, within GFF2699 at 290.302 kb on - strand, within GFF2699 at 290.302 kb on - strand, within GFF2699 at 290.368 kb on - strand, within GFF2699 at 290.376 kb on + strand, within GFF2699 at 290.376 kb on + strand, within GFF2699 at 290.376 kb on + strand, within GFF2699 at 290.392 kb on - strand, within GFF2699 at 290.397 kb on + strand, within GFF2699 at 290.397 kb on + strand, within GFF2699 at 290.398 kb on - strand, within GFF2699 at 290.398 kb on - strand, within GFF2699 at 290.418 kb on + strand, within GFF2699 at 290.885 kb on - strand at 290.997 kb on - strand at 291.182 kb on + strand at 291.255 kb on + strand at 291.256 kb on - strand at 291.375 kb on + strand, within GFF2700 at 291.376 kb on - strand, within GFF2700 at 291.400 kb on - strand, within GFF2700 at 291.537 kb on + strand, within GFF2700 at 291.537 kb on + strand, within GFF2700 at 291.537 kb on + strand, within GFF2700 at 291.538 kb on - strand, within GFF2700 at 291.538 kb on - strand, within GFF2700 at 291.784 kb on - strand at 291.996 kb on + strand at 291.996 kb on + strand at 291.997 kb on - strand at 292.119 kb on + strand, within GFF2701 at 292.119 kb on + strand, within GFF2701 at 292.119 kb on + strand, within GFF2701 at 292.119 kb on + strand, within GFF2701 at 292.119 kb on + strand, within GFF2701 at 292.149 kb on + strand, within GFF2701 at 292.149 kb on + strand, within GFF2701 at 292.149 kb on + strand, within GFF2701 at 292.149 kb on + strand, within GFF2701 at 292.263 kb on + strand, within GFF2701 at 292.314 kb on + strand, within GFF2701 at 292.444 kb on - strand, within GFF2701
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 290,301 + GFF2699 0.57 -1.2 290,301 + GFF2699 0.57 +0.6 290,301 + GFF2699 0.57 +0.1 290,302 - GFF2699 0.57 -0.7 290,302 - GFF2699 0.57 -0.2 290,302 - GFF2699 0.57 +1.0 290,302 - GFF2699 0.57 +0.7 290,302 - GFF2699 0.57 -2.4 290,368 - GFF2699 0.61 +1.5 290,376 + GFF2699 0.61 -0.4 290,376 + GFF2699 0.61 -0.4 290,376 + GFF2699 0.61 -0.3 290,392 - GFF2699 0.62 -0.5 290,397 + GFF2699 0.63 -0.0 290,397 + GFF2699 0.63 -0.2 290,398 - GFF2699 0.63 +0.4 290,398 - GFF2699 0.63 +0.6 290,418 + GFF2699 0.64 +0.1 290,885 - -0.8 290,997 - +0.5 291,182 + +0.9 291,255 + -0.2 291,256 - -0.5 291,375 + GFF2700 0.31 +1.2 291,376 - GFF2700 0.32 -0.2 291,400 - GFF2700 0.37 +0.1 291,537 + GFF2700 0.65 +0.7 291,537 + GFF2700 0.65 +0.3 291,537 + GFF2700 0.65 -1.8 291,538 - GFF2700 0.65 +0.6 291,538 - GFF2700 0.65 -0.0 291,784 - -0.3 291,996 + +0.8 291,996 + +0.2 291,997 - -0.3 292,119 + GFF2701 0.12 -0.2 292,119 + GFF2701 0.12 -0.5 292,119 + GFF2701 0.12 -0.2 292,119 + GFF2701 0.12 -1.1 292,119 + GFF2701 0.12 +1.0 292,149 + GFF2701 0.13 -0.5 292,149 + GFF2701 0.13 +0.5 292,149 + GFF2701 0.13 -0.0 292,149 + GFF2701 0.13 -0.7 292,263 + GFF2701 0.18 -1.3 292,314 + GFF2701 0.19 +0.1 292,444 - GFF2701 0.25 +0.4
Or see this region's nucleotide sequence