Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2612 and GFF2613 are separated by 142 nucleotides GFF2613 and GFF2614 are separated by 13 nucleotides GFF2614 and GFF2615 are separated by 15 nucleotides GFF2615 and GFF2616 are separated by 130 nucleotides
GFF2612 - Ribosome hibernation protein YhbH, at 205,875 to 206,204
GFF2612
GFF2613 - PTS system nitrogen-specific IIA component, PtsN, at 206,347 to 206,817
GFF2613
GFF2614 - HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-), at 206,831 to 207,781
GFF2614
GFF2615 - Ferric uptake regulation protein FUR, at 207,797 to 208,285
GFF2615
GFF2616 - Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex, at 208,416 to 208,952
GFF2616
Position (kb) 206
207
208 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.874 kb on + strand at 205.875 kb on - strand at 205.875 kb on - strand at 205.875 kb on - strand at 205.875 kb on - strand at 205.875 kb on - strand at 205.875 kb on - strand at 205.929 kb on + strand, within GFF2612 at 205.929 kb on + strand, within GFF2612 at 205.930 kb on - strand, within GFF2612 at 205.930 kb on - strand, within GFF2612 at 206.100 kb on + strand, within GFF2612 at 206.100 kb on + strand, within GFF2612 at 206.100 kb on + strand, within GFF2612 at 206.100 kb on + strand, within GFF2612 at 206.101 kb on - strand, within GFF2612 at 206.101 kb on - strand, within GFF2612 at 206.101 kb on - strand, within GFF2612 at 206.101 kb on - strand, within GFF2612 at 206.101 kb on - strand, within GFF2612 at 206.151 kb on + strand, within GFF2612 at 206.152 kb on - strand, within GFF2612 at 206.152 kb on - strand, within GFF2612 at 206.152 kb on - strand, within GFF2612 at 206.184 kb on - strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.267 kb on + strand at 206.268 kb on - strand at 206.268 kb on - strand at 206.268 kb on - strand at 206.268 kb on - strand at 206.268 kb on - strand at 206.268 kb on - strand at 206.299 kb on - strand at 206.322 kb on + strand at 206.344 kb on + strand at 206.344 kb on + strand at 206.344 kb on + strand at 206.344 kb on + strand at 206.344 kb on + strand at 206.344 kb on + strand at 206.990 kb on + strand, within GFF2614 at 206.991 kb on - strand, within GFF2614 at 207.038 kb on + strand, within GFF2614 at 207.038 kb on + strand, within GFF2614 at 207.038 kb on + strand, within GFF2614 at 207.039 kb on - strand, within GFF2614 at 207.039 kb on - strand, within GFF2614 at 207.230 kb on + strand, within GFF2614 at 207.731 kb on + strand at 207.732 kb on - strand at 207.855 kb on + strand, within GFF2615 at 207.856 kb on - strand, within GFF2615 at 208.077 kb on + strand, within GFF2615 at 208.078 kb on - strand, within GFF2615 at 208.078 kb on - strand, within GFF2615 at 208.328 kb on + strand at 208.328 kb on + strand at 208.344 kb on + strand at 208.345 kb on - strand at 208.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 205,874 + +0.5 205,874 + -0.7 205,874 + +0.3 205,874 + +0.3 205,874 + -0.3 205,874 + -1.1 205,874 + -0.1 205,874 + +0.4 205,874 + +0.3 205,874 + +0.2 205,874 + +0.5 205,874 + -1.2 205,874 + +0.2 205,874 + -0.9 205,874 + +0.5 205,875 - -0.0 205,875 - +0.4 205,875 - +0.1 205,875 - -1.0 205,875 - -0.4 205,875 - -0.1 205,929 + GFF2612 0.16 +0.0 205,929 + GFF2612 0.16 -0.0 205,930 - GFF2612 0.17 -1.0 205,930 - GFF2612 0.17 -0.3 206,100 + GFF2612 0.68 -0.3 206,100 + GFF2612 0.68 +1.1 206,100 + GFF2612 0.68 -0.3 206,100 + GFF2612 0.68 +1.4 206,101 - GFF2612 0.68 +0.8 206,101 - GFF2612 0.68 -0.9 206,101 - GFF2612 0.68 +0.3 206,101 - GFF2612 0.68 +0.9 206,101 - GFF2612 0.68 +1.1 206,151 + GFF2612 0.84 -0.8 206,152 - GFF2612 0.84 +1.0 206,152 - GFF2612 0.84 -0.4 206,152 - GFF2612 0.84 -0.1 206,184 - +0.2 206,267 + +0.2 206,267 + +0.1 206,267 + +0.9 206,267 + -0.7 206,267 + +0.2 206,267 + -0.5 206,267 + +0.7 206,267 + -0.7 206,267 + -0.1 206,267 + +0.2 206,268 - +0.1 206,268 - +1.0 206,268 - +0.5 206,268 - +0.3 206,268 - +0.7 206,268 - -0.5 206,299 - -0.8 206,322 + -1.1 206,344 + -0.6 206,344 + -0.3 206,344 + -0.1 206,344 + -1.3 206,344 + -0.1 206,344 + +1.1 206,990 + GFF2614 0.17 -1.7 206,991 - GFF2614 0.17 -0.9 207,038 + GFF2614 0.22 -1.3 207,038 + GFF2614 0.22 -1.3 207,038 + GFF2614 0.22 -1.1 207,039 - GFF2614 0.22 -1.3 207,039 - GFF2614 0.22 -1.9 207,230 + GFF2614 0.42 -0.2 207,731 + -3.9 207,732 - -2.1 207,855 + GFF2615 0.12 -3.4 207,856 - GFF2615 0.12 -3.2 208,077 + GFF2615 0.57 -3.2 208,078 - GFF2615 0.57 -2.9 208,078 - GFF2615 0.57 -0.1 208,328 + -0.6 208,328 + -0.9 208,344 + -1.1 208,345 - -1.3 208,345 - -1.9
Or see this region's nucleotide sequence