Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2594 and GFF2595 overlap by 4 nucleotides GFF2595 and GFF2596 overlap by 30 nucleotides GFF2596 and GFF2597 are separated by 79 nucleotides GFF2597 and GFF2598 are separated by 23 nucleotides
GFF2594 - Adenylate cyclase (EC 4.6.1.1), at 187,268 to 188,623
GFF2594
GFF2595 - hypothetical protein, at 188,620 to 189,363
GFF2595
GFF2596 - hypothetical protein, at 189,334 to 189,453
GFF2596
GFF2597 - Hypothetical protein YaeJ with similarity to translation release factor, at 189,533 to 189,937
GFF2597
GFF2598 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 189,961 to 190,722
GFF2598
Position (kb) 188
189
190 Strain fitness (log2 ratio) -1
0
1 at 187.854 kb on - strand, within GFF2594 at 187.854 kb on - strand, within GFF2594 at 187.874 kb on + strand, within GFF2594 at 187.979 kb on + strand, within GFF2594 at 187.979 kb on + strand, within GFF2594 at 187.980 kb on - strand, within GFF2594 at 187.985 kb on + strand, within GFF2594 at 188.319 kb on - strand, within GFF2594 at 188.354 kb on + strand, within GFF2594 at 188.354 kb on + strand, within GFF2594 at 188.354 kb on + strand, within GFF2594 at 188.355 kb on - strand, within GFF2594 at 188.355 kb on - strand, within GFF2594 at 188.355 kb on - strand, within GFF2594 at 188.972 kb on + strand, within GFF2595 at 188.972 kb on + strand, within GFF2595 at 188.972 kb on + strand, within GFF2595 at 189.290 kb on + strand at 189.291 kb on - strand at 189.291 kb on - strand at 189.451 kb on + strand at 189.482 kb on - strand at 189.488 kb on + strand at 189.510 kb on + strand at 190.160 kb on + strand, within GFF2598 at 190.160 kb on + strand, within GFF2598
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 187,854 - GFF2594 0.43 -0.1 187,854 - GFF2594 0.43 -0.1 187,874 + GFF2594 0.45 +0.3 187,979 + GFF2594 0.52 -0.2 187,979 + GFF2594 0.52 -0.3 187,980 - GFF2594 0.53 +0.4 187,985 + GFF2594 0.53 -0.5 188,319 - GFF2594 0.78 +0.0 188,354 + GFF2594 0.80 +0.4 188,354 + GFF2594 0.80 -0.6 188,354 + GFF2594 0.80 -0.3 188,355 - GFF2594 0.80 +0.1 188,355 - GFF2594 0.80 -0.3 188,355 - GFF2594 0.80 +1.3 188,972 + GFF2595 0.47 +0.2 188,972 + GFF2595 0.47 +0.5 188,972 + GFF2595 0.47 +0.4 189,290 + -0.3 189,291 - -0.4 189,291 - -0.9 189,451 + +0.7 189,482 - +0.3 189,488 + -0.1 189,510 + +1.3 190,160 + GFF2598 0.26 -0.2 190,160 + GFF2598 0.26 -0.0
Or see this region's nucleotide sequence