Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2563

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2561 and GFF2562 overlap by 4 nucleotidesGFF2562 and GFF2563 are separated by 132 nucleotidesGFF2563 and GFF2564 are separated by 207 nucleotidesGFF2564 and GFF2565 overlap by 4 nucleotidesGFF2565 and GFF2566 are separated by 21 nucleotides GFF2561 - hypothetical protein, at 150,760 to 151,221 GFF2561 GFF2562 - hypothetical protein, at 151,218 to 151,877 GFF2562 GFF2563 - hypothetical protein, at 152,010 to 152,600 GFF2563 GFF2564 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 152,808 to 153,347 GFF2564 GFF2565 - hypothetical protein, at 153,344 to 153,472 GFF2565 GFF2566 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 153,494 to 157,093 GFF2566 Position (kb) 152 153Strain fitness (log2 ratio) -2 -1 0 1 2at 151.237 kb on + strandat 151.237 kb on + strandat 151.237 kb on + strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.238 kb on - strandat 151.255 kb on + strandat 151.255 kb on + strandat 151.255 kb on + strandat 151.255 kb on + strandat 151.256 kb on - strandat 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.288 kb on + strand, within GFF2562at 151.289 kb on - strand, within GFF2562at 151.289 kb on - strand, within GFF2562at 151.289 kb on - strand, within GFF2562at 151.289 kb on - strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.294 kb on + strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.295 kb on - strand, within GFF2562at 151.315 kb on + strand, within GFF2562at 151.315 kb on + strand, within GFF2562at 151.315 kb on + strand, within GFF2562at 151.316 kb on - strand, within GFF2562at 151.316 kb on - strand, within GFF2562at 152.030 kb on - strandat 152.030 kb on - strandat 152.030 kb on - strandat 152.030 kb on - strandat 152.030 kb on - strandat 152.030 kb on - strandat 152.056 kb on + strandat 152.056 kb on + strandat 152.057 kb on - strandat 152.057 kb on - strandat 152.057 kb on - strandat 152.057 kb on - strandat 152.060 kb on + strandat 152.060 kb on + strandat 152.061 kb on - strandat 152.061 kb on - strandat 152.090 kb on - strand, within GFF2563at 152.090 kb on - strand, within GFF2563at 152.090 kb on - strand, within GFF2563at 152.100 kb on - strand, within GFF2563at 152.387 kb on - strand, within GFF2563at 152.645 kb on + strandat 152.646 kb on - strandat 152.646 kb on - strandat 152.646 kb on - strandat 152.646 kb on - strandat 152.707 kb on + strandat 152.707 kb on + strandat 152.708 kb on - strandat 152.708 kb on - strandat 152.746 kb on - strandat 152.770 kb on - strandat 152.803 kb on + strandat 152.803 kb on + strandat 152.803 kb on + strandat 152.804 kb on - strandat 152.804 kb on - strandat 152.804 kb on - strandat 152.831 kb on + strandat 152.831 kb on + strandat 152.842 kb on - strandat 153.013 kb on + strand, within GFF2564at 153.013 kb on + strand, within GFF2564at 153.013 kb on + strand, within GFF2564at 153.013 kb on + strand, within GFF2564at 153.014 kb on - strand, within GFF2564at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.394 kb on + strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.395 kb on - strand, within GFF2565at 153.426 kb on - strand, within GFF2565at 153.557 kb on + strandat 153.558 kb on - strandat 153.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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151,237 + -0.1
151,237 + -0.2
151,237 + -0.7
151,238 - -0.9
151,238 - -0.4
151,238 - -0.2
151,238 - -0.8
151,238 - +1.0
151,238 - -0.2
151,238 - -1.2
151,255 + -0.4
151,255 + -0.3
151,255 + +0.1
151,255 + +0.6
151,256 - -1.1
151,288 + GFF2562 0.11 -0.6
151,288 + GFF2562 0.11 +1.0
151,288 + GFF2562 0.11 -0.7
151,288 + GFF2562 0.11 +2.1
151,288 + GFF2562 0.11 -1.3
151,288 + GFF2562 0.11 +0.9
151,288 + GFF2562 0.11 -0.4
151,289 - GFF2562 0.11 +0.3
151,289 - GFF2562 0.11 +2.3
151,289 - GFF2562 0.11 +0.4
151,289 - GFF2562 0.11 -0.5
151,294 + GFF2562 0.12 -1.1
151,294 + GFF2562 0.12 +1.0
151,294 + GFF2562 0.12 -0.6
151,294 + GFF2562 0.12 -0.0
151,294 + GFF2562 0.12 +0.2
151,294 + GFF2562 0.12 +0.9
151,295 - GFF2562 0.12 -0.6
151,295 - GFF2562 0.12 +0.2
151,295 - GFF2562 0.12 -0.3
151,295 - GFF2562 0.12 +0.4
151,295 - GFF2562 0.12 -0.2
151,295 - GFF2562 0.12 -0.3
151,295 - GFF2562 0.12 +0.0
151,315 + GFF2562 0.15 +0.2
151,315 + GFF2562 0.15 -0.2
151,315 + GFF2562 0.15 +0.1
151,316 - GFF2562 0.15 -1.0
151,316 - GFF2562 0.15 -0.2
152,030 - +0.1
152,030 - -0.4
152,030 - -0.6
152,030 - -0.6
152,030 - -0.6
152,030 - -1.0
152,056 + +0.6
152,056 + -1.0
152,057 - -0.2
152,057 - +0.1
152,057 - -0.7
152,057 - +0.7
152,060 + -0.9
152,060 + -0.3
152,061 - -0.6
152,061 - +0.1
152,090 - GFF2563 0.14 +0.9
152,090 - GFF2563 0.14 +0.2
152,090 - GFF2563 0.14 +0.9
152,100 - GFF2563 0.15 +0.9
152,387 - GFF2563 0.64 -0.0
152,645 + -0.0
152,646 - +0.5
152,646 - -0.0
152,646 - +0.1
152,646 - +0.2
152,707 + -0.1
152,707 + -0.1
152,708 - -0.6
152,708 - +0.2
152,746 - -0.9
152,770 - +0.7
152,803 + -0.1
152,803 + -2.0
152,803 + -0.4
152,804 - +0.8
152,804 - +0.2
152,804 - +0.3
152,831 + +0.3
152,831 + -0.3
152,842 - -0.6
153,013 + GFF2564 0.38 -0.3
153,013 + GFF2564 0.38 -1.6
153,013 + GFF2564 0.38 +0.3
153,013 + GFF2564 0.38 +0.6
153,014 - GFF2564 0.38 -0.4
153,394 + GFF2565 0.39 -0.3
153,394 + GFF2565 0.39 +0.6
153,394 + GFF2565 0.39 -0.6
153,394 + GFF2565 0.39 -0.3
153,394 + GFF2565 0.39 -0.3
153,394 + GFF2565 0.39 +0.1
153,394 + GFF2565 0.39 +0.2
153,394 + GFF2565 0.39 -0.5
153,394 + GFF2565 0.39 +0.7
153,394 + GFF2565 0.39 +0.0
153,394 + GFF2565 0.39 -0.5
153,394 + GFF2565 0.39 -0.3
153,394 + GFF2565 0.39 -0.6
153,394 + GFF2565 0.39 -1.3
153,394 + GFF2565 0.39 +0.1
153,394 + GFF2565 0.39 -0.2
153,395 - GFF2565 0.40 +0.1
153,395 - GFF2565 0.40 -0.8
153,395 - GFF2565 0.40 -0.6
153,395 - GFF2565 0.40 -0.3
153,395 - GFF2565 0.40 +0.0
153,395 - GFF2565 0.40 -0.1
153,395 - GFF2565 0.40 +0.8
153,395 - GFF2565 0.40 +1.3
153,426 - GFF2565 0.64 +0.3
153,557 + +0.4
153,558 - -0.2
153,558 - -1.4

Or see this region's nucleotide sequence