Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2556 and GFF2557 are separated by 345 nucleotides GFF2557 and GFF2558 are separated by 127 nucleotides GFF2558 and GFF2559 are separated by 63 nucleotides
GFF2556 - Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6), at 144,957 to 146,546
GFF2556
GFF2557 - Mobile element protein, at 146,892 to 147,314
GFF2557
GFF2558 - hypothetical protein, at 147,442 to 147,909
GFF2558
GFF2559 - hypothetical protein, at 147,973 to 149,823
GFF2559
Position (kb) 147
148 Strain fitness (log2 ratio) -2
-1
0
1
2 at 146.455 kb on + strand at 146.456 kb on - strand at 146.456 kb on - strand at 146.717 kb on + strand at 146.717 kb on + strand at 146.717 kb on + strand at 146.717 kb on + strand at 146.717 kb on + strand at 146.741 kb on + strand at 146.741 kb on + strand at 146.742 kb on - strand at 146.774 kb on + strand at 146.774 kb on + strand at 146.775 kb on - strand at 146.845 kb on - strand at 147.189 kb on + strand, within GFF2557 at 147.240 kb on + strand, within GFF2557 at 147.240 kb on + strand, within GFF2557 at 147.323 kb on + strand at 147.324 kb on - strand at 147.324 kb on - strand at 147.324 kb on - strand at 147.324 kb on - strand at 147.395 kb on + strand at 147.395 kb on + strand at 147.395 kb on + strand at 147.395 kb on + strand at 147.395 kb on + strand at 147.396 kb on - strand at 147.396 kb on - strand at 147.396 kb on - strand at 147.533 kb on + strand, within GFF2558 at 147.533 kb on + strand, within GFF2558 at 147.533 kb on - strand, within GFF2558 at 147.534 kb on - strand, within GFF2558 at 147.534 kb on - strand, within GFF2558 at 147.534 kb on - strand, within GFF2558 at 147.534 kb on - strand, within GFF2558 at 147.534 kb on - strand, within GFF2558 at 147.952 kb on + strand at 147.952 kb on + strand at 147.952 kb on + strand at 147.952 kb on + strand at 147.952 kb on + strand at 147.952 kb on + strand at 147.953 kb on - strand at 147.953 kb on - strand at 147.953 kb on - strand at 147.953 kb on - strand at 148.241 kb on + strand, within GFF2559 at 148.241 kb on + strand, within GFF2559 at 148.241 kb on + strand, within GFF2559 at 148.323 kb on - strand, within GFF2559 at 148.337 kb on + strand, within GFF2559 at 148.338 kb on - strand, within GFF2559 at 148.338 kb on - strand, within GFF2559 at 148.338 kb on - strand, within GFF2559 at 148.433 kb on + strand, within GFF2559 at 148.434 kb on - strand, within GFF2559 at 148.616 kb on + strand, within GFF2559 at 148.625 kb on + strand, within GFF2559 at 148.784 kb on + strand, within GFF2559 at 148.785 kb on - strand, within GFF2559 at 148.785 kb on - strand, within GFF2559
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 146,455 + +0.2 146,456 - +0.0 146,456 - -1.1 146,717 + -0.1 146,717 + +0.3 146,717 + -0.2 146,717 + +0.5 146,717 + +0.0 146,741 + +1.1 146,741 + +0.1 146,742 - +0.5 146,774 + +0.2 146,774 + -1.3 146,775 - +0.4 146,845 - -0.9 147,189 + GFF2557 0.70 +1.0 147,240 + GFF2557 0.82 +1.0 147,240 + GFF2557 0.82 -1.1 147,323 + -2.0 147,324 - -0.5 147,324 - +0.5 147,324 - +0.2 147,324 - -0.3 147,395 + +0.5 147,395 + -1.4 147,395 + -0.2 147,395 + -0.2 147,395 + -0.1 147,396 - +0.1 147,396 - +0.0 147,396 - +0.6 147,533 + GFF2558 0.19 +2.3 147,533 + GFF2558 0.19 +0.4 147,533 - GFF2558 0.19 +0.3 147,534 - GFF2558 0.20 -0.4 147,534 - GFF2558 0.20 +0.5 147,534 - GFF2558 0.20 +0.7 147,534 - GFF2558 0.20 -1.2 147,534 - GFF2558 0.20 +0.9 147,952 + +0.0 147,952 + -0.4 147,952 + -1.2 147,952 + +0.8 147,952 + -0.2 147,952 + -0.3 147,953 - +0.3 147,953 - +1.2 147,953 - -0.2 147,953 - -0.5 148,241 + GFF2559 0.14 -0.8 148,241 + GFF2559 0.14 +0.3 148,241 + GFF2559 0.14 +0.1 148,323 - GFF2559 0.19 +0.2 148,337 + GFF2559 0.20 -0.3 148,338 - GFF2559 0.20 -0.4 148,338 - GFF2559 0.20 -0.4 148,338 - GFF2559 0.20 -0.6 148,433 + GFF2559 0.25 +0.8 148,434 - GFF2559 0.25 -1.9 148,616 + GFF2559 0.35 -0.7 148,625 + GFF2559 0.35 +0.1 148,784 + GFF2559 0.44 -0.2 148,785 - GFF2559 0.44 +0.1 148,785 - GFF2559 0.44 -0.3
Or see this region's nucleotide sequence