Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2527

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2526 and GFF2527 overlap by 4 nucleotidesGFF2527 and GFF2528 overlap by 4 nucleotides GFF2526 - S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase, at 107,881 to 109,110 GFF2526 GFF2527 - Hypothetical protein COG3496, at 109,107 to 109,886 GFF2527 GFF2528 - COG2907: Amine oxidase, flavin-containing, at 109,883 to 111,241 GFF2528 Position (kb) 109 110Strain fitness (log2 ratio) -1 0 1at 108.139 kb on + strand, within GFF2526at 108.140 kb on - strand, within GFF2526at 108.161 kb on + strand, within GFF2526at 108.161 kb on + strand, within GFF2526at 108.161 kb on + strand, within GFF2526at 108.161 kb on + strand, within GFF2526at 108.161 kb on + strand, within GFF2526at 108.161 kb on + strand, within GFF2526at 108.161 kb on + strand, within GFF2526at 108.161 kb on + strand, within GFF2526at 108.161 kb on + strand, within GFF2526at 108.162 kb on - strand, within GFF2526at 108.162 kb on - strand, within GFF2526at 108.162 kb on - strand, within GFF2526at 108.162 kb on - strand, within GFF2526at 108.162 kb on - strand, within GFF2526at 108.162 kb on - strand, within GFF2526at 108.162 kb on - strand, within GFF2526at 108.162 kb on - strand, within GFF2526at 108.162 kb on - strand, within GFF2526at 108.278 kb on + strand, within GFF2526at 108.279 kb on - strand, within GFF2526at 108.290 kb on + strand, within GFF2526at 108.632 kb on + strand, within GFF2526at 108.633 kb on - strand, within GFF2526at 108.633 kb on - strand, within GFF2526at 108.656 kb on - strand, within GFF2526at 108.662 kb on + strand, within GFF2526at 108.684 kb on - strand, within GFF2526at 108.694 kb on + strand, within GFF2526at 108.749 kb on + strand, within GFF2526at 108.750 kb on - strand, within GFF2526at 108.777 kb on - strand, within GFF2526at 108.777 kb on - strand, within GFF2526at 108.863 kb on + strand, within GFF2526at 108.863 kb on + strand, within GFF2526at 108.863 kb on + strand, within GFF2526at 108.864 kb on - strand, within GFF2526at 108.864 kb on - strand, within GFF2526at 109.343 kb on - strand, within GFF2527at 109.469 kb on - strand, within GFF2527at 109.489 kb on + strand, within GFF2527at 109.489 kb on + strand, within GFF2527at 109.489 kb on + strand, within GFF2527at 109.490 kb on - strand, within GFF2527at 109.490 kb on - strand, within GFF2527at 109.490 kb on - strand, within GFF2527at 109.490 kb on - strand, within GFF2527at 109.490 kb on - strand, within GFF2527at 109.564 kb on + strand, within GFF2527at 109.610 kb on - strand, within GFF2527at 110.014 kb on - strandat 110.115 kb on + strand, within GFF2528at 110.115 kb on + strand, within GFF2528at 110.115 kb on + strand, within GFF2528at 110.115 kb on + strand, within GFF2528at 110.116 kb on - strand, within GFF2528at 110.121 kb on + strand, within GFF2528at 110.121 kb on + strand, within GFF2528at 110.121 kb on + strand, within GFF2528at 110.121 kb on + strand, within GFF2528at 110.121 kb on + strand, within GFF2528at 110.121 kb on + strand, within GFF2528at 110.121 kb on + strand, within GFF2528at 110.122 kb on - strand, within GFF2528at 110.122 kb on - strand, within GFF2528at 110.122 kb on - strand, within GFF2528at 110.122 kb on - strand, within GFF2528at 110.122 kb on - strand, within GFF2528at 110.122 kb on - strand, within GFF2528at 110.220 kb on + strand, within GFF2528at 110.221 kb on - strand, within GFF2528at 110.221 kb on - strand, within GFF2528at 110.272 kb on - strand, within GFF2528at 110.272 kb on - strand, within GFF2528at 110.350 kb on - strand, within GFF2528at 110.589 kb on + strand, within GFF2528at 110.589 kb on + strand, within GFF2528at 110.589 kb on + strand, within GFF2528at 110.589 kb on + strand, within GFF2528at 110.590 kb on - strand, within GFF2528at 110.590 kb on - strand, within GFF2528at 110.590 kb on - strand, within GFF2528at 110.590 kb on - strand, within GFF2528at 110.590 kb on - strand, within GFF2528at 110.718 kb on + strand, within GFF2528at 110.719 kb on - strand, within GFF2528at 110.719 kb on - strand, within GFF2528at 110.719 kb on - strand, within GFF2528at 110.719 kb on - strand, within GFF2528

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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108,139 + GFF2526 0.21 -0.2
108,140 - GFF2526 0.21 -0.2
108,161 + GFF2526 0.23 -0.1
108,161 + GFF2526 0.23 +0.6
108,161 + GFF2526 0.23 +0.7
108,161 + GFF2526 0.23 +0.6
108,161 + GFF2526 0.23 -0.0
108,161 + GFF2526 0.23 +0.0
108,161 + GFF2526 0.23 +0.3
108,161 + GFF2526 0.23 -1.6
108,161 + GFF2526 0.23 -0.6
108,162 - GFF2526 0.23 +0.1
108,162 - GFF2526 0.23 +0.6
108,162 - GFF2526 0.23 +0.0
108,162 - GFF2526 0.23 +0.0
108,162 - GFF2526 0.23 +0.4
108,162 - GFF2526 0.23 +0.6
108,162 - GFF2526 0.23 -0.0
108,162 - GFF2526 0.23 -0.5
108,162 - GFF2526 0.23 -0.4
108,278 + GFF2526 0.32 -0.4
108,279 - GFF2526 0.32 -1.3
108,290 + GFF2526 0.33 -0.8
108,632 + GFF2526 0.61 -0.5
108,633 - GFF2526 0.61 -0.6
108,633 - GFF2526 0.61 -0.1
108,656 - GFF2526 0.63 -0.0
108,662 + GFF2526 0.63 -0.9
108,684 - GFF2526 0.65 -0.2
108,694 + GFF2526 0.66 -0.0
108,749 + GFF2526 0.71 +0.2
108,750 - GFF2526 0.71 -0.4
108,777 - GFF2526 0.73 -0.7
108,777 - GFF2526 0.73 -0.4
108,863 + GFF2526 0.80 -0.3
108,863 + GFF2526 0.80 +0.3
108,863 + GFF2526 0.80 -0.3
108,864 - GFF2526 0.80 +0.1
108,864 - GFF2526 0.80 -0.4
109,343 - GFF2527 0.30 -0.1
109,469 - GFF2527 0.46 -1.3
109,489 + GFF2527 0.49 -0.3
109,489 + GFF2527 0.49 -0.3
109,489 + GFF2527 0.49 +0.9
109,490 - GFF2527 0.49 +0.0
109,490 - GFF2527 0.49 -0.4
109,490 - GFF2527 0.49 -1.1
109,490 - GFF2527 0.49 -0.2
109,490 - GFF2527 0.49 -0.7
109,564 + GFF2527 0.59 -1.1
109,610 - GFF2527 0.64 +0.4
110,014 - -0.0
110,115 + GFF2528 0.17 +0.0
110,115 + GFF2528 0.17 -0.1
110,115 + GFF2528 0.17 -0.1
110,115 + GFF2528 0.17 -0.0
110,116 - GFF2528 0.17 -0.6
110,121 + GFF2528 0.18 -0.1
110,121 + GFF2528 0.18 +0.2
110,121 + GFF2528 0.18 -0.4
110,121 + GFF2528 0.18 +0.1
110,121 + GFF2528 0.18 +0.1
110,121 + GFF2528 0.18 -0.1
110,121 + GFF2528 0.18 -0.6
110,122 - GFF2528 0.18 +0.4
110,122 - GFF2528 0.18 +0.6
110,122 - GFF2528 0.18 +1.0
110,122 - GFF2528 0.18 +0.1
110,122 - GFF2528 0.18 -0.5
110,122 - GFF2528 0.18 +0.0
110,220 + GFF2528 0.25 -0.0
110,221 - GFF2528 0.25 +0.3
110,221 - GFF2528 0.25 -0.4
110,272 - GFF2528 0.29 +0.4
110,272 - GFF2528 0.29 -0.1
110,350 - GFF2528 0.34 -0.3
110,589 + GFF2528 0.52 -0.7
110,589 + GFF2528 0.52 -0.2
110,589 + GFF2528 0.52 -0.2
110,589 + GFF2528 0.52 -0.9
110,590 - GFF2528 0.52 -0.1
110,590 - GFF2528 0.52 +0.9
110,590 - GFF2528 0.52 -0.0
110,590 - GFF2528 0.52 -0.3
110,590 - GFF2528 0.52 -0.2
110,718 + GFF2528 0.61 +0.1
110,719 - GFF2528 0.62 +1.0
110,719 - GFF2528 0.62 -1.2
110,719 - GFF2528 0.62 +0.1
110,719 - GFF2528 0.62 -0.3

Or see this region's nucleotide sequence