Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2335

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
1,218,916	+				+0.2
1,218,916	+				+0.7
1,218,953	-				-0.5
1,218,953	-				+0.0
1,218,977	+				-0.1
1,218,978	-				+0.1
1,219,084	+		GFF2334	0.25	-0.2
1,219,084	+		GFF2334	0.25	-0.7
1,219,095	-		GFF2334	0.30	+0.1
1,219,109	+		GFF2334	0.37	-0.2
1,219,148	+		GFF2334	0.57	-0.3
1,219,148	+		GFF2334	0.57	-0.3
1,219,148	+		GFF2334	0.57	-0.1
1,219,149	-		GFF2334	0.58	-0.3
1,219,149	-		GFF2334	0.58	-0.1
1,219,208	+		GFF2334	0.88	-1.1
1,219,209	-		GFF2334	0.89	+0.3
1,219,222	-				+1.7
1,219,244	+				-0.8
1,219,245	+				+0.4
1,219,245	+				-0.2
1,219,245	+				-0.1
1,219,246	-				-0.1
1,219,246	-				+0.1
1,219,246	-				-0.8
1,219,266	+				+1.0
1,219,266	+				+0.7
1,219,267	-				-0.5
1,219,340	+				+1.4
1,219,340	+				+0.7
1,219,340	+				+0.3
1,219,341	-				+0.5
1,219,341	-				-0.7
1,219,341	-				-0.5
1,219,341	-				-1.0
1,219,341	-				-0.6
1,219,351	+				+0.1
1,219,351	+				-0.1
1,219,351	+				-1.3
1,219,351	+				+0.6
1,219,352	-				-0.2
1,219,352	-				-0.6
1,219,352	-				+0.4
1,219,395	+				+0.7
1,219,395	+				+0.2
1,219,395	+				-0.3
1,219,395	+				+0.3
1,219,396	-				-0.1
1,219,396	-				+0.0
1,219,396	-				-0.3
1,219,435	-				-0.2
1,219,459	-				-0.2
1,219,494	+				+2.1
1,219,540	+				-0.3
1,219,540	+				+0.1
1,219,540	+				+0.1
1,219,540	+				+0.7
1,219,540	+				+0.6
1,219,541	-				+0.0
1,219,541	-				+0.1
1,219,541	-				+0.2
1,219,556	-				+0.2
1,219,556	-				+0.1
1,219,556	-				+0.4
1,219,567	+				-2.2
1,219,568	-				-0.4
1,219,628	+				-0.2
1,219,628	+				+0.1
1,219,650	+				+0.6
1,219,654	+				-0.4
1,219,654	+				-0.2
1,219,654	+				-1.8
1,219,654	+				-0.3
1,219,654	+				-0.6
1,219,654	+				-0.3
1,219,655	-				+1.6
1,219,655	-				-0.9
1,219,655	-				-0.0
1,219,655	-				+0.2
1,219,681	+				-0.1
1,219,682	-				+0.3
1,219,723	+				-1.4
1,219,723	+				+0.1
1,219,723	+				+0.3
1,219,723	+				+0.3
1,219,723	+				-0.4
1,219,723	+				-0.3
1,219,723	+				+0.1
1,219,724	-				-0.9
1,219,724	-				+0.3
1,219,724	-				-0.4
1,219,724	-				+0.4
1,219,724	-				+0.5
1,219,771	+				-0.6
1,219,771	+				-0.2
1,219,771	+				-0.1
1,219,772	-				-0.1
1,219,772	-				+1.3
1,219,772	-				-0.3
1,219,772	-				+0.1
1,219,891	+				-0.1
1,219,892	-				+0.9
1,219,892	-				-0.4
1,219,954	+				-0.5
1,219,955	-				-0.2
1,219,955	-				-0.2
1,219,971	+				-0.2
1,219,971	+				-0.1
1,219,971	-				+1.0
1,219,972	-				+1.0
1,219,972	-				+0.1
1,219,972	-				+0.2
1,219,972	-				-0.6
1,220,059	-		GFF2335	0.16	-0.2
1,220,059	-		GFF2335	0.16	+0.1
1,220,059	-		GFF2335	0.16	-0.2
1,220,110	+		GFF2335	0.22	+0.1
1,220,110	+		GFF2335	0.22	-0.7
1,220,111	-		GFF2335	0.22	+0.3
1,220,111	-		GFF2335	0.22	-0.7
1,220,181	+		GFF2335	0.30	+0.6
1,220,182	-		GFF2335	0.30	+0.2
1,220,185	+		GFF2335	0.30	+0.3
1,220,185	+		GFF2335	0.30	+0.5
1,220,185	+		GFF2335	0.30	+0.3
1,220,185	+		GFF2335	0.30	-0.0
1,220,185	+		GFF2335	0.30	+0.1
1,220,185	+		GFF2335	0.30	+0.3
1,220,185	+		GFF2335	0.30	+0.8
1,220,186	-		GFF2335	0.30	+1.4
1,220,186	-		GFF2335	0.30	-0.1
1,220,251	+		GFF2335	0.37	-0.0
1,220,251	+		GFF2335	0.37	+0.1
1,220,251	+		GFF2335	0.37	-0.8
1,220,251	+		GFF2335	0.37	+1.8
1,220,252	-		GFF2335	0.37	-0.4
1,220,252	-		GFF2335	0.37	-1.3
1,220,277	-		GFF2335	0.40	-0.2
1,220,324	+		GFF2335	0.45	+0.5
1,220,372	+		GFF2335	0.51	-0.0
1,220,372	+		GFF2335	0.51	+0.5
1,220,372	+		GFF2335	0.51	+0.4
1,220,373	-		GFF2335	0.51	-0.1
1,220,373	-		GFF2335	0.51	-1.1
1,220,373	-		GFF2335	0.51	-0.1
1,220,376	+		GFF2335	0.51	-0.4
1,220,376	+		GFF2335	0.51	-1.0
1,220,376	+		GFF2335	0.51	-0.8
1,220,376	+		GFF2335	0.51	-0.1
1,220,377	-		GFF2335	0.51	+0.2
1,220,377	-		GFF2335	0.51	-0.6
1,220,377	-		GFF2335	0.51	+1.1
1,220,399	+		GFF2335	0.54	+0.5
1,220,399	+		GFF2335	0.54	-0.4
1,220,399	+		GFF2335	0.54	+0.7
1,220,400	-		GFF2335	0.54	-0.3
1,220,401	+		GFF2335	0.54	-0.2
1,220,401	+		GFF2335	0.54	+0.2
1,220,401	+		GFF2335	0.54	-0.6
1,220,401	+		GFF2335	0.54	-2.2
1,220,402	-		GFF2335	0.54	+0.1
1,220,402	-		GFF2335	0.54	-0.4
1,220,402	-		GFF2335	0.54	-1.1
1,220,405	+		GFF2335	0.54	-0.6
1,220,406	-		GFF2335	0.54	+0.0
1,220,406	-		GFF2335	0.54	-0.3
1,220,412	+		GFF2335	0.55	-1.5
1,220,413	-		GFF2335	0.55	+0.1
1,220,413	-		GFF2335	0.55	-0.3
1,220,413	-		GFF2335	0.55	+0.5
1,220,597	+		GFF2335	0.76	-0.9
1,220,597	+		GFF2335	0.76	+0.1
1,220,636	-		GFF2335	0.80	-0.7
1,220,636	-		GFF2335	0.80	+1.1
1,220,694	+		GFF2335	0.86	+1.3
1,220,694	+		GFF2335	0.86	-0.2
1,220,695	-		GFF2335	0.86	+0.1
1,220,695	-		GFF2335	0.86	-0.3
1,220,695	-		GFF2335	0.86	+0.1
1,220,859	+				-0.3
1,220,860	-				+0.1
1,220,860	-				-1.4
1,220,887	+				+0.3
1,220,888	+				-0.3
1,220,888	+				-0.1
1,220,888	+				+0.1
1,220,889	-				+0.3
1,220,889	-				-1.5
1,220,889	-				-0.0
1,220,918	+				+0.3
1,220,918	+				-0.0
1,220,918	+				+0.5
1,220,919	-				+0.5
1,220,919	-				+0.2
1,220,919	-				+0.3
1,220,919	-				-0.1
1,220,955	+				-0.4
1,220,955	+				+0.0
1,220,956	-				-0.1
1,220,956	-				-1.7
1,220,958	+				+1.3
1,220,958	+				-0.1
1,220,958	+				+0.6
1,220,959	-				-0.5
1,220,959	-				+0.1
1,220,959	-				+0.1
1,221,022	+		GFF2336	0.13	-0.6
1,221,022	+		GFF2336	0.13	+0.0
1,221,023	-		GFF2336	0.13	-0.4
1,221,023	-		GFF2336	0.13	-0.2
1,221,023	-		GFF2336	0.13	+0.0
1,221,023	-		GFF2336	0.13	+0.1
1,221,083	+		GFF2336	0.17	+0.0
1,221,110	+		GFF2336	0.19	-0.1
1,221,110	+		GFF2336	0.19	-0.0
1,221,111	-		GFF2336	0.19	-0.2
1,221,113	+		GFF2336	0.19	+0.4
1,221,147	-		GFF2336	0.21	+1.0
1,221,185	+		GFF2336	0.24	-0.1
1,221,185	+		GFF2336	0.24	-0.3
1,221,185	+		GFF2336	0.24	+0.4
1,221,185	+		GFF2336	0.24	-0.1
1,221,185	+		GFF2336	0.24	-0.2
1,221,185	+		GFF2336	0.24	-0.2
1,221,185	+		GFF2336	0.24	-0.5
1,221,186	-		GFF2336	0.24	+0.6
1,221,186	-		GFF2336	0.24	+0.6
1,221,186	-		GFF2336	0.24	+0.3
1,221,186	-		GFF2336	0.24	+0.2
1,221,186	-		GFF2336	0.24	-1.4
1,221,213	-		GFF2336	0.26	-0.2
1,221,213	-		GFF2336	0.26	+0.2
1,221,231	+		GFF2336	0.27	+1.0
1,221,232	-		GFF2336	0.27	-0.9
1,221,260	+		GFF2336	0.29	-0.8
1,221,260	+		GFF2336	0.29	+0.2
1,221,260	+		GFF2336	0.29	-0.1
1,221,261	-		GFF2336	0.29	-0.2
1,221,271	-		GFF2336	0.29	+0.1
1,221,297	+		GFF2336	0.31	-0.0
1,221,303	+		GFF2336	0.31	+0.1
1,221,304	-		GFF2336	0.31	-0.2
1,221,305	+		GFF2336	0.31	-0.4
1,221,305	+		GFF2336	0.31	-0.1
1,221,305	+		GFF2336	0.31	+0.6
1,221,418	+		GFF2336	0.39	-1.1
1,221,448	+		GFF2336	0.41	+0.7
1,221,448	+		GFF2336	0.41	-0.2
1,221,450	+		GFF2336	0.41	-0.1
1,221,450	+		GFF2336	0.41	+0.4
1,221,450	+		GFF2336	0.41	+1.3
1,221,451	-		GFF2336	0.41	-0.5
1,221,451	-		GFF2336	0.41	+0.5
1,221,470	+		GFF2336	0.42	-1.3
1,221,471	-		GFF2336	0.42	-0.1
1,221,471	-		GFF2336	0.42	-0.2
1,221,471	-		GFF2336	0.42	+0.1
1,221,527	+		GFF2336	0.46	+0.1
1,221,527	+		GFF2336	0.46	+0.1
1,221,527	+		GFF2336	0.46	-0.0
1,221,527	+		GFF2336	0.46	+0.6
1,221,528	-		GFF2336	0.46	+0.9
1,221,528	-		GFF2336	0.46	-0.8
1,221,559	-		GFF2336	0.48	+1.0
1,221,559	-		GFF2336	0.48	-0.1
1,221,559	-		GFF2336	0.48	+0.5
1,221,576	+		GFF2336	0.49	+0.5
1,221,577	-		GFF2336	0.49	+0.0
1,221,577	-		GFF2336	0.49	-0.7
1,221,577	-		GFF2336	0.49	-0.4
1,221,577	-		GFF2336	0.49	-0.6
1,221,664	+		GFF2336	0.54	+0.9
1,221,695	+		GFF2336	0.56	+0.1
1,221,695	+		GFF2336	0.56	+0.1
1,221,695	+		GFF2336	0.56	-0.6
1,221,696	-		GFF2336	0.56	+0.5
1,221,696	-		GFF2336	0.56	-0.6
1,221,696	-		GFF2336	0.56	-0.8
1,221,708	+		GFF2336	0.57	-0.6
1,221,708	+		GFF2336	0.57	-0.1
1,221,708	+		GFF2336	0.57	-1.3
1,221,709	-		GFF2336	0.57	+0.4
1,221,709	-		GFF2336	0.57	+1.1
1,221,709	-		GFF2336	0.57	-0.9
1,221,709	-		GFF2336	0.57	+0.2
1,221,709	-		GFF2336	0.57	-0.3
1,221,718	+		GFF2336	0.58	+0.7
1,221,812	+		GFF2336	0.64	-1.3
1,221,813	-		GFF2336	0.64	+0.2