Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2329

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
1,213,159	-		GFF2328	0.37	+0.3
1,213,290	+		GFF2328	0.64	+0.4
1,213,290	+		GFF2328	0.64	-0.2
1,213,291	-		GFF2328	0.65	+0.2
1,213,456	-				-0.1
1,213,456	-				-1.6
1,213,706	-		GFF2329	0.20	+0.4
1,213,717	+		GFF2329	0.20	+0.9
1,213,718	-		GFF2329	0.20	-0.2
1,213,718	-		GFF2329	0.20	-0.0
1,213,945	+		GFF2329	0.38	+0.3
1,213,981	+		GFF2329	0.41	+0.8
1,214,044	+		GFF2329	0.45	+0.7
1,214,045	-		GFF2329	0.45	-0.2
1,214,045	-		GFF2329	0.45	-0.2
1,214,045	-		GFF2329	0.45	+1.4
1,214,308	+		GFF2329	0.66	+1.2
1,214,308	+		GFF2329	0.66	+1.0
1,214,309	-		GFF2329	0.66	+0.7
1,214,309	-		GFF2329	0.66	-0.4
1,214,671	+				+0.8
1,214,671	+				-2.5
1,214,671	+				-0.4
1,214,907	+				-0.6
1,214,907	+				+0.1
1,214,907	+				-0.4
1,214,908	-				-0.5
1,214,908	-				-0.1
1,214,908	-				-0.3
1,214,908	-				+0.2
1,214,908	-				-0.2
1,215,051	+		GFF2330	0.19	-0.6
1,215,051	+		GFF2330	0.19	-0.9
1,215,051	+		GFF2330	0.19	-0.3
1,215,096	+		GFF2330	0.22	-0.6
1,215,271	-		GFF2330	0.34	+0.7
1,215,418	-		GFF2330	0.44	-1.0
1,215,444	+		GFF2330	0.45	-0.2
1,215,444	+		GFF2330	0.45	-1.9
1,215,444	+		GFF2330	0.45	-0.1
1,215,445	-		GFF2330	0.45	-0.4
1,215,594	+		GFF2330	0.55	-0.3