Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2310

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
1,193,000	+		GFF2308	0.79	+0.1
1,193,001	-		GFF2308	0.79	-0.6
1,193,001	-		GFF2308	0.79	+0.3
1,193,318	+				-1.4
1,193,754	+		GFF2309	0.68	-0.8
1,193,754	+		GFF2309	0.68	+0.3
1,193,754	+		GFF2309	0.68	+0.5
1,193,754	+		GFF2309	0.68	+0.7
1,193,754	+		GFF2309	0.68	-1.6
1,193,755	-		GFF2309	0.68	-0.7
1,193,793	+		GFF2309	0.79	+0.7
1,193,793	+		GFF2309	0.79	+0.7
1,193,794	-		GFF2309	0.79	+0.9
1,193,794	-		GFF2309	0.79	+0.6
1,193,794	-		GFF2309	0.79	-0.3
1,194,221	+		GFF2310	0.37	+0.5
1,194,221	+		GFF2310	0.37	+0.7
1,194,222	-		GFF2310	0.37	+0.2
1,194,275	+		GFF2310	0.43	+0.5
1,194,276	-		GFF2310	0.43	-0.1
1,194,276	-		GFF2310	0.43	-1.3
1,194,276	-		GFF2310	0.43	+0.0
1,194,276	-		GFF2310	0.43	-0.7
1,194,276	-		GFF2310	0.43	+0.1
1,194,512	+		GFF2310	0.67	+0.3
1,194,512	+		GFF2310	0.67	+1.5
1,194,513	-		GFF2310	0.67	-0.8
1,194,564	-		GFF2310	0.72	-0.3
1,194,665	+		GFF2310	0.82	+1.9
1,194,665	+		GFF2310	0.82	+1.2
1,194,824	-				+0.1
1,194,961	+				+1.6
1,194,961	+				+1.3
1,194,962	-				+0.9
1,194,962	-				-0.4
1,195,022	-		GFF2311	0.10	+0.3
1,195,231	+		GFF2311	0.25	+0.9
1,195,231	+		GFF2311	0.25	+0.2
1,195,232	-		GFF2311	0.25	+0.4
1,195,234	+		GFF2311	0.25	-0.2
1,195,234	+		GFF2311	0.25	-0.4
1,195,234	+		GFF2311	0.25	+0.1
1,195,234	+		GFF2311	0.25	+0.7
1,195,234	+		GFF2311	0.25	+0.2
1,195,234	+		GFF2311	0.25	+0.3
1,195,234	+		GFF2311	0.25	-0.2
1,195,234	+		GFF2311	0.25	+0.4
1,195,235	-		GFF2311	0.25	-0.1
1,195,235	-		GFF2311	0.25	-0.3
1,195,235	-		GFF2311	0.25	-1.1
1,195,236	+		GFF2311	0.25	-0.1
1,195,409	-		GFF2311	0.38	+0.6
1,195,631	-		GFF2311	0.54	+0.2
1,195,631	-		GFF2311	0.54	-1.4
1,195,631	-		GFF2311	0.54	+0.1
1,195,631	-		GFF2311	0.54	+0.0
1,195,631	-		GFF2311	0.54	-0.0
1,195,810	+		GFF2311	0.66	+0.5
1,195,811	-		GFF2311	0.67	-0.2