Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2088 and GFF2089 are separated by 117 nucleotides GFF2089 and GFF2090 are separated by 258 nucleotides
GFF2088 - Fosfomycin resistance protein FosX, at 973,179 to 973,361
GFF2088
GFF2089 - Probable signal peptide protein, at 973,479 to 974,081
GFF2089
GFF2090 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 974,340 to 976,328
GFF2090
Position (kb) 973
974
975 Strain fitness (log2 ratio) -1
0
1
2 at 972.539 kb on + strand at 972.540 kb on - strand at 972.733 kb on + strand at 972.733 kb on + strand at 972.733 kb on + strand at 972.734 kb on - strand at 972.734 kb on - strand at 972.734 kb on - strand at 972.740 kb on - strand at 972.779 kb on + strand at 972.779 kb on + strand at 972.787 kb on + strand at 972.787 kb on + strand at 972.788 kb on - strand at 972.871 kb on + strand at 972.871 kb on + strand at 972.925 kb on + strand at 972.925 kb on + strand at 972.926 kb on - strand at 972.926 kb on - strand at 972.974 kb on + strand at 972.974 kb on + strand at 972.975 kb on - strand at 973.142 kb on + strand at 973.143 kb on - strand at 973.143 kb on - strand at 973.162 kb on - strand at 973.258 kb on + strand, within GFF2088 at 973.264 kb on + strand, within GFF2088 at 973.264 kb on + strand, within GFF2088 at 973.264 kb on + strand, within GFF2088 at 973.265 kb on - strand, within GFF2088 at 973.265 kb on - strand, within GFF2088 at 973.265 kb on - strand, within GFF2088 at 973.265 kb on - strand, within GFF2088 at 973.265 kb on - strand, within GFF2088 at 973.374 kb on + strand at 973.452 kb on + strand at 973.453 kb on - strand at 973.453 kb on - strand at 973.454 kb on - strand at 973.710 kb on + strand, within GFF2089 at 973.710 kb on + strand, within GFF2089 at 973.711 kb on - strand, within GFF2089 at 973.818 kb on + strand, within GFF2089 at 973.818 kb on + strand, within GFF2089 at 973.818 kb on + strand, within GFF2089 at 973.818 kb on + strand, within GFF2089 at 973.819 kb on - strand, within GFF2089 at 974.083 kb on - strand at 974.482 kb on - strand at 974.538 kb on + strand at 974.766 kb on + strand, within GFF2090 at 974.766 kb on + strand, within GFF2090 at 974.767 kb on - strand, within GFF2090 at 974.767 kb on - strand, within GFF2090 at 974.767 kb on - strand, within GFF2090 at 974.799 kb on + strand, within GFF2090 at 974.800 kb on - strand, within GFF2090 at 974.817 kb on + strand, within GFF2090 at 974.818 kb on - strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.844 kb on + strand, within GFF2090 at 974.859 kb on + strand, within GFF2090 at 974.860 kb on - strand, within GFF2090 at 974.982 kb on + strand, within GFF2090 at 974.983 kb on - strand, within GFF2090
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 972,539 + -0.1 972,540 - +0.0 972,733 + -1.3 972,733 + +0.9 972,733 + -0.3 972,734 - -0.0 972,734 - -0.6 972,734 - -0.4 972,740 - +0.1 972,779 + -0.4 972,779 + +0.1 972,787 + -0.6 972,787 + -0.6 972,788 - -0.4 972,871 + +0.2 972,871 + +0.2 972,925 + +0.4 972,925 + -0.1 972,926 - -0.5 972,926 - -1.2 972,974 + +0.0 972,974 + +0.2 972,975 - +0.0 973,142 + +0.7 973,143 - -0.9 973,143 - -0.8 973,162 - +0.3 973,258 + GFF2088 0.43 -0.3 973,264 + GFF2088 0.46 +0.7 973,264 + GFF2088 0.46 -0.6 973,264 + GFF2088 0.46 -0.6 973,265 - GFF2088 0.47 +1.0 973,265 - GFF2088 0.47 +0.5 973,265 - GFF2088 0.47 +0.4 973,265 - GFF2088 0.47 +0.4 973,265 - GFF2088 0.47 +0.2 973,374 + -0.4 973,452 + +0.2 973,453 - -0.5 973,453 - +0.9 973,454 - +0.6 973,710 + GFF2089 0.38 -0.3 973,710 + GFF2089 0.38 +0.7 973,711 - GFF2089 0.38 +0.1 973,818 + GFF2089 0.56 -0.5 973,818 + GFF2089 0.56 +1.6 973,818 + GFF2089 0.56 +0.4 973,818 + GFF2089 0.56 +1.1 973,819 - GFF2089 0.56 +0.7 974,083 - +0.1 974,482 - -0.2 974,538 + -0.2 974,766 + GFF2090 0.21 +2.0 974,766 + GFF2090 0.21 +0.5 974,767 - GFF2090 0.21 -0.6 974,767 - GFF2090 0.21 +1.7 974,767 - GFF2090 0.21 -0.1 974,799 + GFF2090 0.23 +0.2 974,800 - GFF2090 0.23 +0.6 974,817 + GFF2090 0.24 +0.5 974,818 - GFF2090 0.24 -0.1 974,844 + GFF2090 0.25 +0.2 974,844 + GFF2090 0.25 +0.0 974,844 + GFF2090 0.25 +0.2 974,844 + GFF2090 0.25 -0.3 974,844 + GFF2090 0.25 +0.3 974,844 + GFF2090 0.25 +0.1 974,859 + GFF2090 0.26 +0.7 974,860 - GFF2090 0.26 -0.6 974,982 + GFF2090 0.32 +1.2 974,983 - GFF2090 0.32 +0.7
Or see this region's nucleotide sequence