Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2075 and GFF2076 are separated by 18 nucleotides GFF2076 and GFF2077 are separated by 454 nucleotides GFF2077 and GFF2078 overlap by 4 nucleotides GFF2078 and GFF2079 are separated by 63 nucleotides
GFF2075 - HipA protein, at 961,046 to 962,374
GFF2075
GFF2076 - Maebl, at 962,393 to 962,794
GFF2076
GFF2077 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 963,249 to 965,489
GFF2077
GFF2078 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 965,486 to 965,950
GFF2078
GFF2079 - Nucleoside-diphosphate-sugar epimerases, at 966,014 to 966,946
GFF2079
Position (kb) 963
964
965
966 Strain fitness (log2 ratio) -2
-1
0
1
2 at 962.386 kb on + strand at 962.387 kb on - strand at 962.387 kb on - strand at 962.404 kb on - strand at 962.463 kb on + strand, within GFF2076 at 962.463 kb on + strand, within GFF2076 at 962.463 kb on + strand, within GFF2076 at 962.464 kb on - strand, within GFF2076 at 962.464 kb on - strand, within GFF2076 at 962.464 kb on - strand, within GFF2076 at 962.464 kb on - strand, within GFF2076 at 962.701 kb on - strand, within GFF2076 at 962.728 kb on - strand, within GFF2076 at 962.916 kb on + strand at 962.972 kb on + strand at 962.973 kb on - strand at 962.973 kb on - strand at 962.973 kb on - strand at 962.973 kb on - strand at 963.089 kb on + strand at 963.091 kb on + strand at 963.092 kb on - strand at 963.203 kb on + strand at 963.241 kb on + strand at 963.241 kb on + strand at 963.242 kb on - strand at 963.242 kb on - strand at 963.250 kb on + strand at 963.250 kb on + strand at 963.265 kb on + strand at 963.265 kb on + strand at 963.265 kb on + strand at 963.265 kb on + strand at 963.265 kb on + strand at 963.265 kb on + strand at 963.266 kb on - strand at 963.266 kb on - strand at 963.266 kb on - strand at 963.266 kb on - strand at 963.266 kb on - strand at 963.345 kb on + strand at 963.346 kb on - strand at 963.419 kb on - strand at 963.419 kb on - strand at 963.436 kb on + strand at 963.436 kb on + strand at 963.436 kb on + strand at 963.437 kb on - strand at 963.437 kb on - strand at 963.437 kb on - strand at 963.437 kb on - strand at 963.437 kb on - strand at 963.437 kb on - strand at 963.475 kb on + strand, within GFF2077 at 963.475 kb on + strand, within GFF2077 at 963.476 kb on - strand, within GFF2077 at 963.805 kb on + strand, within GFF2077 at 963.806 kb on - strand, within GFF2077 at 963.901 kb on + strand, within GFF2077 at 963.901 kb on + strand, within GFF2077 at 963.902 kb on - strand, within GFF2077 at 964.235 kb on - strand, within GFF2077 at 964.245 kb on + strand, within GFF2077 at 964.246 kb on - strand, within GFF2077 at 964.246 kb on - strand, within GFF2077 at 964.246 kb on - strand, within GFF2077 at 964.246 kb on - strand, within GFF2077 at 964.348 kb on + strand, within GFF2077 at 964.348 kb on + strand, within GFF2077 at 964.349 kb on - strand, within GFF2077 at 964.393 kb on + strand, within GFF2077 at 964.405 kb on + strand, within GFF2077 at 964.405 kb on + strand, within GFF2077 at 964.406 kb on - strand, within GFF2077 at 964.406 kb on - strand, within GFF2077 at 964.894 kb on + strand, within GFF2077 at 964.894 kb on + strand, within GFF2077 at 964.895 kb on - strand, within GFF2077 at 964.895 kb on - strand, within GFF2077 at 964.919 kb on + strand, within GFF2077 at 965.179 kb on + strand, within GFF2077 at 965.179 kb on + strand, within GFF2077 at 965.180 kb on + strand, within GFF2077 at 965.180 kb on - strand, within GFF2077 at 965.180 kb on - strand, within GFF2077 at 965.180 kb on - strand, within GFF2077 at 965.180 kb on - strand, within GFF2077 at 965.180 kb on - strand, within GFF2077 at 965.182 kb on + strand, within GFF2077 at 965.182 kb on + strand, within GFF2077 at 965.407 kb on + strand at 965.407 kb on + strand at 965.407 kb on + strand at 965.407 kb on + strand at 965.407 kb on + strand at 965.408 kb on - strand at 965.408 kb on - strand at 965.408 kb on - strand at 965.408 kb on - strand at 965.408 kb on - strand at 965.547 kb on + strand, within GFF2078 at 965.548 kb on - strand, within GFF2078 at 965.847 kb on + strand, within GFF2078 at 965.847 kb on + strand, within GFF2078 at 965.847 kb on + strand, within GFF2078 at 965.847 kb on + strand, within GFF2078 at 965.848 kb on - strand, within GFF2078 at 965.848 kb on - strand, within GFF2078 at 965.942 kb on + strand at 965.943 kb on - strand at 965.943 kb on - strand at 965.968 kb on + strand at 965.968 kb on + strand at 965.968 kb on + strand at 965.968 kb on + strand at 965.968 kb on + strand at 965.968 kb on + strand at 965.968 kb on + strand at 965.968 kb on + strand at 965.969 kb on - strand at 965.969 kb on - strand at 965.969 kb on - strand at 965.969 kb on - strand at 965.969 kb on - strand at 965.969 kb on - strand at 965.969 kb on - strand at 965.969 kb on - strand at 966.015 kb on + strand at 966.016 kb on - strand at 966.247 kb on + strand, within GFF2079 at 966.248 kb on - strand, within GFF2079 at 966.264 kb on + strand, within GFF2079 at 966.264 kb on + strand, within GFF2079 at 966.264 kb on + strand, within GFF2079 at 966.264 kb on + strand, within GFF2079 at 966.265 kb on - strand, within GFF2079 at 966.265 kb on - strand, within GFF2079 at 966.265 kb on - strand, within GFF2079 at 966.309 kb on + strand, within GFF2079 at 966.310 kb on - strand, within GFF2079 at 966.474 kb on + strand, within GFF2079 at 966.474 kb on + strand, within GFF2079 at 966.474 kb on + strand, within GFF2079 at 966.474 kb on + strand, within GFF2079 at 966.474 kb on + strand, within GFF2079 at 966.475 kb on - strand, within GFF2079 at 966.475 kb on - strand, within GFF2079 at 966.475 kb on - strand, within GFF2079 at 966.475 kb on - strand, within GFF2079 at 966.475 kb on - strand, within GFF2079 at 966.475 kb on - strand, within GFF2079 at 966.475 kb on - strand, within GFF2079
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 962,386 + -0.5 962,387 - +0.5 962,387 - -0.3 962,404 - +0.3 962,463 + GFF2076 0.17 -1.2 962,463 + GFF2076 0.17 -0.6 962,463 + GFF2076 0.17 +0.5 962,464 - GFF2076 0.18 +0.1 962,464 - GFF2076 0.18 +1.0 962,464 - GFF2076 0.18 -0.2 962,464 - GFF2076 0.18 -0.2 962,701 - GFF2076 0.77 -1.9 962,728 - GFF2076 0.83 -0.3 962,916 + -0.1 962,972 + -0.1 962,973 - -0.4 962,973 - +0.5 962,973 - +1.7 962,973 - +1.0 963,089 + +0.2 963,091 + -0.5 963,092 - +0.0 963,203 + -0.8 963,241 + +0.7 963,241 + +0.7 963,242 - -0.3 963,242 - -0.3 963,250 + -0.3 963,250 + +0.2 963,265 + -0.3 963,265 + +0.7 963,265 + +1.2 963,265 + +0.1 963,265 + -0.1 963,265 + +1.3 963,266 - -0.0 963,266 - -0.3 963,266 - -0.2 963,266 - -0.1 963,266 - -1.1 963,345 + +0.1 963,346 - -0.1 963,419 - +0.2 963,419 - +0.0 963,436 + -0.7 963,436 + +0.3 963,436 + +0.1 963,437 - +0.3 963,437 - +0.7 963,437 - +0.4 963,437 - +0.2 963,437 - +0.4 963,437 - -0.4 963,475 + GFF2077 0.10 -0.2 963,475 + GFF2077 0.10 +0.0 963,476 - GFF2077 0.10 -0.5 963,805 + GFF2077 0.25 -0.6 963,806 - GFF2077 0.25 +0.3 963,901 + GFF2077 0.29 -0.9 963,901 + GFF2077 0.29 -0.3 963,902 - GFF2077 0.29 -0.1 964,235 - GFF2077 0.44 +0.3 964,245 + GFF2077 0.44 -0.4 964,246 - GFF2077 0.44 -0.1 964,246 - GFF2077 0.44 +0.2 964,246 - GFF2077 0.44 +0.0 964,246 - GFF2077 0.44 -0.3 964,348 + GFF2077 0.49 -0.8 964,348 + GFF2077 0.49 +0.2 964,349 - GFF2077 0.49 -1.2 964,393 + GFF2077 0.51 +0.9 964,405 + GFF2077 0.52 -0.8 964,405 + GFF2077 0.52 +0.4 964,406 - GFF2077 0.52 -1.1 964,406 - GFF2077 0.52 +0.3 964,894 + GFF2077 0.73 +0.3 964,894 + GFF2077 0.73 -0.0 964,895 - GFF2077 0.73 -1.7 964,895 - GFF2077 0.73 -0.3 964,919 + GFF2077 0.75 +0.9 965,179 + GFF2077 0.86 +0.6 965,179 + GFF2077 0.86 +0.2 965,180 + GFF2077 0.86 -0.5 965,180 - GFF2077 0.86 +0.8 965,180 - GFF2077 0.86 -0.5 965,180 - GFF2077 0.86 +0.4 965,180 - GFF2077 0.86 +0.4 965,180 - GFF2077 0.86 -0.3 965,182 + GFF2077 0.86 +1.2 965,182 + GFF2077 0.86 -0.0 965,407 + +0.3 965,407 + -1.1 965,407 + +0.2 965,407 + +0.3 965,407 + -0.4 965,408 - -0.3 965,408 - +0.1 965,408 - -0.8 965,408 - -0.2 965,408 - +0.0 965,547 + GFF2078 0.13 +1.0 965,548 - GFF2078 0.13 -0.5 965,847 + GFF2078 0.78 +0.2 965,847 + GFF2078 0.78 +0.0 965,847 + GFF2078 0.78 -0.3 965,847 + GFF2078 0.78 -0.2 965,848 - GFF2078 0.78 -0.1 965,848 - GFF2078 0.78 +1.1 965,942 + -0.2 965,943 - -0.0 965,943 - +1.2 965,968 + -0.6 965,968 + +0.0 965,968 + +0.2 965,968 + +0.0 965,968 + -0.7 965,968 + +0.6 965,968 + +0.7 965,968 + +0.6 965,969 - +0.4 965,969 - -0.3 965,969 - +0.1 965,969 - -0.1 965,969 - +1.0 965,969 - +0.4 965,969 - +0.1 965,969 - -0.4 966,015 + -0.3 966,016 - -0.2 966,247 + GFF2079 0.25 +0.1 966,248 - GFF2079 0.25 -0.2 966,264 + GFF2079 0.27 -0.2 966,264 + GFF2079 0.27 +0.1 966,264 + GFF2079 0.27 -0.3 966,264 + GFF2079 0.27 -0.2 966,265 - GFF2079 0.27 -0.1 966,265 - GFF2079 0.27 +0.7 966,265 - GFF2079 0.27 -0.5 966,309 + GFF2079 0.32 +1.2 966,310 - GFF2079 0.32 -0.6 966,474 + GFF2079 0.49 -1.4 966,474 + GFF2079 0.49 +0.4 966,474 + GFF2079 0.49 -0.3 966,474 + GFF2079 0.49 +0.6 966,474 + GFF2079 0.49 +0.7 966,475 - GFF2079 0.49 +2.2 966,475 - GFF2079 0.49 +0.0 966,475 - GFF2079 0.49 +0.4 966,475 - GFF2079 0.49 +0.9 966,475 - GFF2079 0.49 +0.8 966,475 - GFF2079 0.49 -2.1 966,475 - GFF2079 0.49 -0.6
Or see this region's nucleotide sequence