Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2040

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2038 and GFF2039 are separated by 21 nucleotidesGFF2039 and GFF2040 are separated by 27 nucleotidesGFF2040 and GFF2041 overlap by 4 nucleotidesGFF2041 and GFF2042 are separated by 172 nucleotidesGFF2042 and GFF2043 overlap by 28 nucleotides GFF2038 - Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94), at 919,690 to 920,499 GFF2038 GFF2039 - hypothetical protein, at 920,521 to 920,685 GFF2039 GFF2040 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 920,713 to 922,212 GFF2040 GFF2041 - hypothetical protein, at 922,209 to 922,700 GFF2041 GFF2042 - hypothetical protein, at 922,873 to 922,992 GFF2042 GFF2043 - Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster, at 922,965 to 924,266 GFF2043 Position (kb) 920 921 922 923Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 919.794 kb on - strand, within GFF2038at 920.033 kb on + strand, within GFF2038at 920.403 kb on - strand, within GFF2038at 920.403 kb on - strand, within GFF2038at 920.403 kb on - strand, within GFF2038at 920.571 kb on + strand, within GFF2039at 920.571 kb on + strand, within GFF2039at 920.571 kb on + strand, within GFF2039at 920.572 kb on - strand, within GFF2039at 920.572 kb on - strand, within GFF2039at 920.572 kb on - strand, within GFF2039at 920.712 kb on + strandat 920.712 kb on + strandat 920.712 kb on + strandat 920.712 kb on + strandat 920.712 kb on + strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.713 kb on - strandat 920.788 kb on + strandat 920.929 kb on + strand, within GFF2040at 920.930 kb on - strand, within GFF2040at 920.930 kb on - strand, within GFF2040at 921.190 kb on + strand, within GFF2040at 921.208 kb on + strand, within GFF2040at 921.208 kb on + strand, within GFF2040at 921.209 kb on - strand, within GFF2040at 921.257 kb on - strand, within GFF2040at 921.257 kb on - strand, within GFF2040at 921.391 kb on + strand, within GFF2040at 921.392 kb on - strand, within GFF2040at 921.508 kb on + strand, within GFF2040at 921.508 kb on + strand, within GFF2040at 921.509 kb on - strand, within GFF2040at 921.509 kb on - strand, within GFF2040at 921.619 kb on + strand, within GFF2040at 921.619 kb on + strand, within GFF2040at 921.620 kb on - strand, within GFF2040at 921.620 kb on - strand, within GFF2040at 921.620 kb on - strand, within GFF2040at 921.632 kb on - strand, within GFF2040at 921.632 kb on - strand, within GFF2040at 921.695 kb on - strand, within GFF2040at 921.722 kb on - strand, within GFF2040at 921.790 kb on + strand, within GFF2040at 921.791 kb on - strand, within GFF2040at 921.791 kb on - strand, within GFF2040at 921.791 kb on - strand, within GFF2040at 921.791 kb on - strand, within GFF2040at 921.791 kb on - strand, within GFF2040at 921.892 kb on + strand, within GFF2040at 921.893 kb on - strand, within GFF2040at 921.894 kb on - strand, within GFF2040at 922.084 kb on + strandat 922.085 kb on - strandat 922.351 kb on - strand, within GFF2041at 922.537 kb on - strand, within GFF2041at 922.698 kb on + strandat 922.698 kb on + strandat 922.699 kb on - strandat 922.699 kb on - strandat 922.699 kb on - strandat 922.966 kb on + strandat 922.966 kb on + strandat 922.966 kb on + strandat 922.966 kb on + strandat 923.065 kb on + strandat 923.065 kb on + strandat 923.065 kb on + strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.066 kb on - strandat 923.164 kb on + strand, within GFF2043at 923.165 kb on - strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.167 kb on + strand, within GFF2043at 923.168 kb on - strand, within GFF2043at 923.168 kb on - strand, within GFF2043at 923.168 kb on - strand, within GFF2043at 923.168 kb on - strand, within GFF2043

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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919,794 - GFF2038 0.13 -1.4
920,033 + GFF2038 0.42 -0.3
920,403 - GFF2038 0.88 -1.7
920,403 - GFF2038 0.88 -0.4
920,403 - GFF2038 0.88 -1.7
920,571 + GFF2039 0.30 +0.1
920,571 + GFF2039 0.30 +1.0
920,571 + GFF2039 0.30 +0.6
920,572 - GFF2039 0.31 +0.5
920,572 - GFF2039 0.31 +0.9
920,572 - GFF2039 0.31 +0.3
920,712 + +0.1
920,712 + +1.4
920,712 + -0.9
920,712 + +0.1
920,712 + +0.1
920,713 - +0.1
920,713 - +0.4
920,713 - -1.2
920,713 - -0.8
920,713 - -0.7
920,713 - -0.5
920,713 - -0.6
920,713 - -2.6
920,713 - -1.2
920,713 - -0.1
920,713 - -0.4
920,713 - -1.2
920,713 - -0.9
920,713 - -0.5
920,788 + -2.3
920,929 + GFF2040 0.14 -0.6
920,930 - GFF2040 0.14 -0.4
920,930 - GFF2040 0.14 -2.9
921,190 + GFF2040 0.32 -1.2
921,208 + GFF2040 0.33 -4.2
921,208 + GFF2040 0.33 -2.4
921,209 - GFF2040 0.33 -3.2
921,257 - GFF2040 0.36 -2.8
921,257 - GFF2040 0.36 -2.3
921,391 + GFF2040 0.45 -0.1
921,392 - GFF2040 0.45 -2.4
921,508 + GFF2040 0.53 -3.7
921,508 + GFF2040 0.53 -3.7
921,509 - GFF2040 0.53 -0.1
921,509 - GFF2040 0.53 -0.6
921,619 + GFF2040 0.60 -2.1
921,619 + GFF2040 0.60 -1.8
921,620 - GFF2040 0.60 -3.2
921,620 - GFF2040 0.60 -3.9
921,620 - GFF2040 0.60 -0.4
921,632 - GFF2040 0.61 -2.2
921,632 - GFF2040 0.61 -2.9
921,695 - GFF2040 0.65 -0.6
921,722 - GFF2040 0.67 -1.4
921,790 + GFF2040 0.72 -2.9
921,791 - GFF2040 0.72 -3.2
921,791 - GFF2040 0.72 -2.9
921,791 - GFF2040 0.72 -1.3
921,791 - GFF2040 0.72 -1.7
921,791 - GFF2040 0.72 -1.3
921,892 + GFF2040 0.79 -2.7
921,893 - GFF2040 0.79 +0.0
921,894 - GFF2040 0.79 -1.6
922,084 + -3.1
922,085 - -2.2
922,351 - GFF2041 0.29 -0.5
922,537 - GFF2041 0.67 +0.4
922,698 + -0.5
922,698 + -0.2
922,699 - -0.0
922,699 - -0.2
922,699 - -0.6
922,966 + -0.4
922,966 + +0.2
922,966 + -0.5
922,966 + -0.0
923,065 + -6.1
923,065 + -4.1
923,065 + -5.0
923,066 - -1.1
923,066 - -4.3
923,066 - -3.5
923,066 - -3.0
923,066 - -3.9
923,164 + GFF2043 0.15 -3.9
923,165 - GFF2043 0.15 -1.7
923,167 + GFF2043 0.16 -1.4
923,167 + GFF2043 0.16 -0.9
923,167 + GFF2043 0.16 -0.9
923,167 + GFF2043 0.16 -4.3
923,167 + GFF2043 0.16 -2.4
923,167 + GFF2043 0.16 -0.6
923,168 - GFF2043 0.16 -2.7
923,168 - GFF2043 0.16 -4.2
923,168 - GFF2043 0.16 -3.8
923,168 - GFF2043 0.16 -6.2

Or see this region's nucleotide sequence