Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2037 and GFF2038 are separated by 61 nucleotides GFF2038 and GFF2039 are separated by 21 nucleotides GFF2039 and GFF2040 are separated by 27 nucleotides
GFF2037 - glutamine synthetase family protein, at 918,261 to 919,628
GFF2037
GFF2038 - Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94), at 919,690 to 920,499
GFF2038
GFF2039 - hypothetical protein, at 920,521 to 920,685
GFF2039
GFF2040 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 920,713 to 922,212
GFF2040
Position (kb) 920
921 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 919.642 kb on + strand at 919.642 kb on + strand at 919.642 kb on + strand at 919.642 kb on + strand at 919.643 kb on - strand at 919.794 kb on - strand, within GFF2038 at 920.033 kb on + strand, within GFF2038 at 920.403 kb on - strand, within GFF2038 at 920.403 kb on - strand, within GFF2038 at 920.403 kb on - strand, within GFF2038 at 920.571 kb on + strand, within GFF2039 at 920.571 kb on + strand, within GFF2039 at 920.571 kb on + strand, within GFF2039 at 920.572 kb on - strand, within GFF2039 at 920.572 kb on - strand, within GFF2039 at 920.572 kb on - strand, within GFF2039 at 920.712 kb on + strand at 920.712 kb on + strand at 920.712 kb on + strand at 920.712 kb on + strand at 920.712 kb on + strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.788 kb on + strand at 920.929 kb on + strand, within GFF2040 at 920.930 kb on - strand, within GFF2040 at 920.930 kb on - strand, within GFF2040 at 921.190 kb on + strand, within GFF2040 at 921.208 kb on + strand, within GFF2040 at 921.208 kb on + strand, within GFF2040 at 921.209 kb on - strand, within GFF2040 at 921.257 kb on - strand, within GFF2040 at 921.257 kb on - strand, within GFF2040 at 921.391 kb on + strand, within GFF2040 at 921.392 kb on - strand, within GFF2040 at 921.508 kb on + strand, within GFF2040 at 921.508 kb on + strand, within GFF2040 at 921.509 kb on - strand, within GFF2040 at 921.509 kb on - strand, within GFF2040 at 921.619 kb on + strand, within GFF2040 at 921.619 kb on + strand, within GFF2040 at 921.620 kb on - strand, within GFF2040 at 921.620 kb on - strand, within GFF2040 at 921.620 kb on - strand, within GFF2040 at 921.632 kb on - strand, within GFF2040 at 921.632 kb on - strand, within GFF2040
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 919,642 + -1.5 919,642 + -1.7 919,642 + -0.6 919,642 + -1.7 919,643 - +0.4 919,794 - GFF2038 0.13 -1.4 920,033 + GFF2038 0.42 -0.3 920,403 - GFF2038 0.88 -1.7 920,403 - GFF2038 0.88 -0.4 920,403 - GFF2038 0.88 -1.7 920,571 + GFF2039 0.30 +0.1 920,571 + GFF2039 0.30 +1.0 920,571 + GFF2039 0.30 +0.6 920,572 - GFF2039 0.31 +0.5 920,572 - GFF2039 0.31 +0.9 920,572 - GFF2039 0.31 +0.3 920,712 + +0.1 920,712 + +1.4 920,712 + -0.9 920,712 + +0.1 920,712 + +0.1 920,713 - +0.1 920,713 - +0.4 920,713 - -1.2 920,713 - -0.8 920,713 - -0.7 920,713 - -0.5 920,713 - -0.6 920,713 - -2.6 920,713 - -1.2 920,713 - -0.1 920,713 - -0.4 920,713 - -1.2 920,713 - -0.9 920,713 - -0.5 920,788 + -2.3 920,929 + GFF2040 0.14 -0.6 920,930 - GFF2040 0.14 -0.4 920,930 - GFF2040 0.14 -2.9 921,190 + GFF2040 0.32 -1.2 921,208 + GFF2040 0.33 -4.2 921,208 + GFF2040 0.33 -2.4 921,209 - GFF2040 0.33 -3.2 921,257 - GFF2040 0.36 -2.8 921,257 - GFF2040 0.36 -2.3 921,391 + GFF2040 0.45 -0.1 921,392 - GFF2040 0.45 -2.4 921,508 + GFF2040 0.53 -3.7 921,508 + GFF2040 0.53 -3.7 921,509 - GFF2040 0.53 -0.1 921,509 - GFF2040 0.53 -0.6 921,619 + GFF2040 0.60 -2.1 921,619 + GFF2040 0.60 -1.8 921,620 - GFF2040 0.60 -3.2 921,620 - GFF2040 0.60 -3.9 921,620 - GFF2040 0.60 -0.4 921,632 - GFF2040 0.61 -2.2 921,632 - GFF2040 0.61 -2.9
Or see this region's nucleotide sequence