Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2028

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2027 and GFF2028 are separated by 34 nucleotidesGFF2028 and GFF2029 overlap by 4 nucleotides GFF2027 - hypothetical protein, at 905,926 to 906,678 GFF2027 GFF2028 - Glutamine synthetase type I (EC 6.3.1.2), at 906,713 to 908,056 GFF2028 GFF2029 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 908,053 to 909,363 GFF2029 Position (kb) 906 907 908 909Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 905.725 kb on + strandat 905.725 kb on + strandat 905.726 kb on - strandat 905.726 kb on - strandat 905.805 kb on + strandat 905.806 kb on - strandat 905.806 kb on - strandat 905.806 kb on - strandat 905.806 kb on - strandat 906.110 kb on + strand, within GFF2027at 906.110 kb on + strand, within GFF2027at 906.111 kb on - strand, within GFF2027at 906.159 kb on - strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.194 kb on + strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.195 kb on - strand, within GFF2027at 906.507 kb on - strand, within GFF2027at 906.507 kb on - strand, within GFF2027at 906.714 kb on + strandat 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.924 kb on + strand, within GFF2028at 906.925 kb on - strand, within GFF2028at 906.925 kb on - strand, within GFF2028at 907.011 kb on + strand, within GFF2028at 907.011 kb on + strand, within GFF2028at 907.011 kb on + strand, within GFF2028at 907.012 kb on - strand, within GFF2028at 907.012 kb on - strand, within GFF2028at 907.012 kb on - strand, within GFF2028at 907.012 kb on - strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.158 kb on + strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.159 kb on - strand, within GFF2028at 907.416 kb on + strand, within GFF2028at 907.452 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.464 kb on + strand, within GFF2028at 907.465 kb on - strand, within GFF2028at 907.465 kb on - strand, within GFF2028at 907.578 kb on + strand, within GFF2028at 907.578 kb on + strand, within GFF2028at 907.579 kb on - strand, within GFF2028at 907.579 kb on - strand, within GFF2028at 907.764 kb on + strand, within GFF2028at 907.765 kb on - strand, within GFF2028at 907.842 kb on + strand, within GFF2028at 907.842 kb on + strand, within GFF2028at 907.842 kb on + strand, within GFF2028at 907.842 kb on + strand, within GFF2028at 907.842 kb on + strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 907.843 kb on - strand, within GFF2028at 908.157 kb on - strandat 908.157 kb on - strandat 908.309 kb on + strand, within GFF2029at 908.310 kb on - strand, within GFF2029at 908.310 kb on - strand, within GFF2029at 908.442 kb on - strand, within GFF2029at 908.442 kb on - strand, within GFF2029at 908.828 kb on + strand, within GFF2029at 908.828 kb on + strand, within GFF2029at 908.828 kb on + strand, within GFF2029at 908.829 kb on - strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.864 kb on + strand, within GFF2029at 908.865 kb on - strand, within GFF2029at 908.865 kb on - strand, within GFF2029at 908.865 kb on - strand, within GFF2029at 908.865 kb on - strand, within GFF2029at 908.865 kb on - strand, within GFF2029at 908.865 kb on - strand, within GFF2029

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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905,725 + +0.7
905,725 + +0.9
905,726 - +0.4
905,726 - -0.1
905,805 + -0.3
905,806 - -0.2
905,806 - -0.9
905,806 - +0.3
905,806 - -0.3
906,110 + GFF2027 0.24 -0.3
906,110 + GFF2027 0.24 -3.8
906,111 - GFF2027 0.25 -1.7
906,159 - GFF2027 0.31 -1.1
906,194 + GFF2027 0.36 -0.9
906,194 + GFF2027 0.36 -1.5
906,194 + GFF2027 0.36 -3.2
906,194 + GFF2027 0.36 -3.3
906,194 + GFF2027 0.36 -1.0
906,195 - GFF2027 0.36 -1.1
906,195 - GFF2027 0.36 -0.6
906,195 - GFF2027 0.36 -0.6
906,195 - GFF2027 0.36 -2.7
906,195 - GFF2027 0.36 -4.3
906,195 - GFF2027 0.36 -0.6
906,195 - GFF2027 0.36 -0.6
906,195 - GFF2027 0.36 -1.4
906,507 - GFF2027 0.77 -1.7
906,507 - GFF2027 0.77 -1.0
906,714 + +0.2
906,924 + GFF2028 0.16 +1.0
906,924 + GFF2028 0.16 +0.1
906,924 + GFF2028 0.16 -0.3
906,924 + GFF2028 0.16 +0.7
906,924 + GFF2028 0.16 -0.3
906,924 + GFF2028 0.16 +0.7
906,924 + GFF2028 0.16 +0.1
906,925 - GFF2028 0.16 -0.3
906,925 - GFF2028 0.16 -0.5
907,011 + GFF2028 0.22 +0.0
907,011 + GFF2028 0.22 +0.2
907,011 + GFF2028 0.22 -0.1
907,012 - GFF2028 0.22 -0.3
907,012 - GFF2028 0.22 -1.1
907,012 - GFF2028 0.22 +0.5
907,012 - GFF2028 0.22 -0.1
907,158 + GFF2028 0.33 -0.3
907,158 + GFF2028 0.33 -0.3
907,158 + GFF2028 0.33 -1.4
907,158 + GFF2028 0.33 +0.3
907,158 + GFF2028 0.33 -0.6
907,158 + GFF2028 0.33 -1.4
907,158 + GFF2028 0.33 +1.0
907,158 + GFF2028 0.33 -0.4
907,159 - GFF2028 0.33 -0.4
907,159 - GFF2028 0.33 -0.6
907,159 - GFF2028 0.33 +0.9
907,159 - GFF2028 0.33 +0.3
907,416 + GFF2028 0.52 +0.1
907,452 + GFF2028 0.55 -0.2
907,464 + GFF2028 0.56 +0.1
907,464 + GFF2028 0.56 +0.5
907,464 + GFF2028 0.56 +0.5
907,464 + GFF2028 0.56 -0.9
907,464 + GFF2028 0.56 -0.0
907,464 + GFF2028 0.56 +0.1
907,465 - GFF2028 0.56 +0.2
907,465 - GFF2028 0.56 +0.6
907,578 + GFF2028 0.64 -0.3
907,578 + GFF2028 0.64 +1.0
907,579 - GFF2028 0.64 +1.7
907,579 - GFF2028 0.64 -0.2
907,764 + GFF2028 0.78 -0.3
907,765 - GFF2028 0.78 +0.3
907,842 + GFF2028 0.84 +0.4
907,842 + GFF2028 0.84 -1.1
907,842 + GFF2028 0.84 -0.6
907,842 + GFF2028 0.84 +0.8
907,842 + GFF2028 0.84 +0.1
907,843 - GFF2028 0.84 -0.2
907,843 - GFF2028 0.84 -0.3
907,843 - GFF2028 0.84 -0.2
907,843 - GFF2028 0.84 +0.2
907,843 - GFF2028 0.84 -0.1
907,843 - GFF2028 0.84 +0.2
907,843 - GFF2028 0.84 -0.2
908,157 - -1.0
908,157 - -1.5
908,309 + GFF2029 0.20 -1.4
908,310 - GFF2029 0.20 -1.2
908,310 - GFF2029 0.20 -0.7
908,442 - GFF2029 0.30 -0.5
908,442 - GFF2029 0.30 -1.0
908,828 + GFF2029 0.59 +0.4
908,828 + GFF2029 0.59 -1.4
908,828 + GFF2029 0.59 -1.7
908,829 - GFF2029 0.59 -0.4
908,864 + GFF2029 0.62 -0.5
908,864 + GFF2029 0.62 -1.0
908,864 + GFF2029 0.62 -1.7
908,864 + GFF2029 0.62 -0.7
908,864 + GFF2029 0.62 -2.3
908,864 + GFF2029 0.62 -0.1
908,864 + GFF2029 0.62 -1.2
908,864 + GFF2029 0.62 -1.9
908,865 - GFF2029 0.62 -1.2
908,865 - GFF2029 0.62 -1.1
908,865 - GFF2029 0.62 -1.3
908,865 - GFF2029 0.62 -0.5
908,865 - GFF2029 0.62 -0.6
908,865 - GFF2029 0.62 -1.0

Or see this region's nucleotide sequence