Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1962 and GFF1963 are separated by 83 nucleotides GFF1963 and GFF1964 are separated by 4 nucleotides GFF1964 and GFF1965 are separated by 60 nucleotides
GFF1962 - Threonine dehydratase (EC 4.3.1.19), at 835,597 to 836,796
GFF1962
GFF1963 - Small-conductance mechanosensitive channel, at 836,880 to 838,340
GFF1963
GFF1964 - hypothetical protein, at 838,345 to 838,773
GFF1964
GFF1965 - hypothetical protein, at 838,834 to 838,977
GFF1965
Position (kb) 836
837
838
839 Strain fitness (log2 ratio) -2
-1
0
1 at 836.033 kb on - strand, within GFF1962 at 836.033 kb on - strand, within GFF1962 at 836.033 kb on - strand, within GFF1962 at 836.874 kb on + strand at 836.875 kb on - strand at 836.875 kb on - strand at 836.875 kb on - strand at 836.875 kb on - strand at 838.086 kb on + strand, within GFF1963 at 838.086 kb on + strand, within GFF1963 at 838.087 kb on - strand, within GFF1963 at 838.147 kb on - strand, within GFF1963 at 838.147 kb on - strand, within GFF1963 at 838.759 kb on + strand at 838.759 kb on + strand at 838.759 kb on + strand at 838.759 kb on + strand at 838.760 kb on - strand at 838.760 kb on - strand at 838.760 kb on - strand at 838.760 kb on - strand at 838.794 kb on + strand at 838.794 kb on + strand at 838.900 kb on + strand, within GFF1965 at 838.900 kb on + strand, within GFF1965 at 838.900 kb on + strand, within GFF1965 at 838.900 kb on + strand, within GFF1965 at 838.900 kb on + strand, within GFF1965 at 838.900 kb on + strand, within GFF1965 at 838.900 kb on + strand, within GFF1965 at 838.900 kb on + strand, within GFF1965 at 838.900 kb on + strand, within GFF1965 at 838.900 kb on + strand, within GFF1965 at 838.900 kb on + strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.901 kb on - strand, within GFF1965 at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.966 kb on + strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 838.967 kb on - strand at 839.065 kb on + strand at 839.066 kb on - strand at 839.066 kb on - strand at 839.066 kb on - strand at 839.095 kb on + strand at 839.095 kb on + strand at 839.096 kb on - strand at 839.106 kb on + strand at 839.106 kb on + strand at 839.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 836,033 - GFF1962 0.36 +0.1 836,033 - GFF1962 0.36 +0.9 836,033 - GFF1962 0.36 -0.5 836,874 + -2.0 836,875 - -1.4 836,875 - +0.4 836,875 - -0.6 836,875 - +0.2 838,086 + GFF1963 0.83 +0.4 838,086 + GFF1963 0.83 -0.7 838,087 - GFF1963 0.83 +0.6 838,147 - GFF1963 0.87 +0.3 838,147 - GFF1963 0.87 +0.6 838,759 + +1.0 838,759 + -0.6 838,759 + +0.3 838,759 + -0.1 838,760 - +0.2 838,760 - +0.0 838,760 - -0.1 838,760 - +0.2 838,794 + +0.9 838,794 + +0.1 838,900 + GFF1965 0.46 -0.6 838,900 + GFF1965 0.46 -0.8 838,900 + GFF1965 0.46 +0.1 838,900 + GFF1965 0.46 -0.6 838,900 + GFF1965 0.46 -1.3 838,900 + GFF1965 0.46 +0.1 838,900 + GFF1965 0.46 -0.1 838,900 + GFF1965 0.46 -0.8 838,900 + GFF1965 0.46 -0.8 838,900 + GFF1965 0.46 +0.6 838,900 + GFF1965 0.46 -0.8 838,901 - GFF1965 0.47 -0.2 838,901 - GFF1965 0.47 -0.6 838,901 - GFF1965 0.47 -0.1 838,901 - GFF1965 0.47 -0.1 838,901 - GFF1965 0.47 +0.9 838,901 - GFF1965 0.47 +1.1 838,901 - GFF1965 0.47 -1.2 838,901 - GFF1965 0.47 +0.2 838,901 - GFF1965 0.47 +0.1 838,901 - GFF1965 0.47 +0.5 838,901 - GFF1965 0.47 -0.3 838,901 - GFF1965 0.47 +0.0 838,901 - GFF1965 0.47 +0.5 838,901 - GFF1965 0.47 -0.2 838,901 - GFF1965 0.47 -0.8 838,966 + -0.3 838,966 + +0.6 838,966 + +0.4 838,966 + -0.6 838,966 + -0.5 838,966 + +0.3 838,966 + +0.3 838,966 + -1.5 838,966 + -0.4 838,966 + -0.5 838,966 + -1.6 838,966 + -0.7 838,966 + -0.1 838,966 + +0.0 838,966 + +0.4 838,966 + -1.0 838,966 + -0.1 838,966 + -0.4 838,966 + -0.3 838,966 + -0.0 838,966 + -0.5 838,966 + -0.3 838,966 + -1.9 838,966 + +0.2 838,966 + +0.9 838,967 - -0.8 838,967 - +0.2 838,967 - -1.2 838,967 - -0.1 838,967 - -0.4 838,967 - -0.0 838,967 - -0.4 838,967 - -0.3 838,967 - -0.5 838,967 - -0.4 838,967 - -0.4 838,967 - -0.6 838,967 - -1.4 838,967 - -0.1 838,967 - -0.8 838,967 - +0.3 838,967 - -0.3 838,967 - -0.7 838,967 - -0.3 838,967 - -0.1 838,967 - -0.6 838,967 - -0.3 838,967 - -0.6 838,967 - -1.8 838,967 - -0.2 839,065 + +0.5 839,066 - +0.1 839,066 - +0.6 839,066 - +0.9 839,095 + -0.2 839,095 + -0.3 839,096 - -0.3 839,106 + -0.6 839,106 + +1.1 839,324 - -0.7
Or see this region's nucleotide sequence