Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1917 and GFF1918 are separated by 170 nucleotides GFF1918 and GFF1919 are separated by 193 nucleotides GFF1919 and GFF1920 are separated by 13 nucleotides
GFF1917 - twitching motility protein PilG, at 791,115 to 792,326
GFF1917
GFF1918 - Glutathione peroxidase family protein, at 792,497 to 792,979
GFF1918
GFF1919 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 793,173 to 794,402
GFF1919
GFF1920 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 794,416 to 795,441
GFF1920
Position (kb) 793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 792.226 kb on + strand at 792.226 kb on + strand at 792.227 kb on - strand at 792.313 kb on + strand at 792.313 kb on + strand at 792.314 kb on - strand at 792.314 kb on - strand at 792.314 kb on - strand at 792.365 kb on + strand at 792.365 kb on + strand at 792.365 kb on + strand at 792.365 kb on + strand at 792.366 kb on - strand at 792.366 kb on - strand at 792.366 kb on - strand at 792.366 kb on - strand at 792.366 kb on - strand at 792.366 kb on - strand at 792.366 kb on - strand at 792.508 kb on - strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.509 kb on + strand at 792.510 kb on - strand at 792.510 kb on - strand at 792.510 kb on - strand at 792.510 kb on - strand at 792.510 kb on - strand at 792.510 kb on - strand at 792.510 kb on - strand at 792.510 kb on - strand at 792.510 kb on - strand at 792.650 kb on + strand, within GFF1918 at 792.650 kb on + strand, within GFF1918 at 792.651 kb on - strand, within GFF1918 at 792.752 kb on + strand, within GFF1918 at 792.752 kb on + strand, within GFF1918 at 792.752 kb on + strand, within GFF1918 at 792.753 kb on - strand, within GFF1918 at 792.753 kb on - strand, within GFF1918 at 792.815 kb on + strand, within GFF1918 at 792.816 kb on - strand, within GFF1918 at 792.816 kb on - strand, within GFF1918 at 792.816 kb on - strand, within GFF1918 at 792.816 kb on - strand, within GFF1918 at 792.920 kb on + strand, within GFF1918 at 792.921 kb on - strand, within GFF1918 at 792.973 kb on - strand at 793.351 kb on + strand, within GFF1919 at 793.352 kb on - strand, within GFF1919 at 793.352 kb on - strand, within GFF1919 at 793.606 kb on + strand, within GFF1919 at 793.636 kb on + strand, within GFF1919 at 793.636 kb on + strand, within GFF1919 at 794.132 kb on - strand, within GFF1919 at 794.245 kb on + strand, within GFF1919 at 794.245 kb on + strand, within GFF1919 at 794.245 kb on + strand, within GFF1919 at 794.245 kb on + strand, within GFF1919 at 794.245 kb on + strand, within GFF1919 at 794.246 kb on - strand, within GFF1919 at 794.246 kb on - strand, within GFF1919 at 794.290 kb on + strand at 794.290 kb on + strand at 794.290 kb on + strand at 794.291 kb on - strand at 794.291 kb on - strand at 794.378 kb on - strand at 794.378 kb on - strand at 795.075 kb on - strand, within GFF1920 at 795.348 kb on - strand at 795.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 792,226 + +0.3 792,226 + -1.1 792,227 - -0.3 792,313 + +0.3 792,313 + -0.4 792,314 - -1.8 792,314 - +0.1 792,314 - +0.1 792,365 + -1.0 792,365 + -1.8 792,365 + -1.3 792,365 + +0.7 792,366 - +0.1 792,366 - +0.2 792,366 - +0.3 792,366 - -1.1 792,366 - +1.3 792,366 - -0.4 792,366 - -0.0 792,508 - -0.2 792,509 + -0.1 792,509 + -0.4 792,509 + +0.3 792,509 + -0.1 792,509 + +1.1 792,509 + -0.1 792,509 + -0.6 792,509 + -0.1 792,509 + +0.6 792,509 + -0.2 792,509 + -1.0 792,509 + -0.1 792,509 + -0.1 792,509 + +0.6 792,509 + +1.4 792,510 - +0.8 792,510 - +1.4 792,510 - +0.2 792,510 - +0.5 792,510 - +0.6 792,510 - -0.4 792,510 - +1.0 792,510 - -0.3 792,510 - -0.3 792,650 + GFF1918 0.32 +1.5 792,650 + GFF1918 0.32 +0.6 792,651 - GFF1918 0.32 +0.6 792,752 + GFF1918 0.53 -0.3 792,752 + GFF1918 0.53 -0.3 792,752 + GFF1918 0.53 +0.2 792,753 - GFF1918 0.53 -0.7 792,753 - GFF1918 0.53 -0.2 792,815 + GFF1918 0.66 +0.0 792,816 - GFF1918 0.66 +0.2 792,816 - GFF1918 0.66 +0.6 792,816 - GFF1918 0.66 +0.9 792,816 - GFF1918 0.66 -0.6 792,920 + GFF1918 0.88 +0.4 792,921 - GFF1918 0.88 -1.4 792,973 - +0.3 793,351 + GFF1919 0.14 +0.2 793,352 - GFF1919 0.15 +0.4 793,352 - GFF1919 0.15 -0.2 793,606 + GFF1919 0.35 -0.0 793,636 + GFF1919 0.38 -0.2 793,636 + GFF1919 0.38 -0.3 794,132 - GFF1919 0.78 -0.5 794,245 + GFF1919 0.87 -0.5 794,245 + GFF1919 0.87 +0.2 794,245 + GFF1919 0.87 +0.3 794,245 + GFF1919 0.87 -0.2 794,245 + GFF1919 0.87 -0.3 794,246 - GFF1919 0.87 -3.0 794,246 - GFF1919 0.87 +0.1 794,290 + -0.1 794,290 + -1.3 794,290 + +0.5 794,291 - +2.1 794,291 - +0.5 794,378 - -1.4 794,378 - -0.1 795,075 - GFF1920 0.64 -0.1 795,348 - +0.6 795,348 - +0.7
Or see this region's nucleotide sequence