Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1917

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1916 and GFF1917 are separated by 10 nucleotidesGFF1917 and GFF1918 are separated by 170 nucleotidesGFF1918 and GFF1919 are separated by 193 nucleotides GFF1916 - Probable transmembrane protein, at 789,833 to 791,104 GFF1916 GFF1917 - twitching motility protein PilG, at 791,115 to 792,326 GFF1917 GFF1918 - Glutathione peroxidase family protein, at 792,497 to 792,979 GFF1918 GFF1919 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 793,173 to 794,402 GFF1919 Position (kb) 791 792 793Strain fitness (log2 ratio) -3 -2 -1 0 1at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.145 kb on + strand, within GFF1916at 790.145 kb on + strand, within GFF1916at 790.146 kb on - strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.556 kb on + strand, within GFF1916at 790.557 kb on - strand, within GFF1916at 790.557 kb on - strand, within GFF1916at 790.557 kb on - strand, within GFF1916at 790.592 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.928 kb on + strand, within GFF1916at 790.929 kb on - strand, within GFF1916at 790.929 kb on - strand, within GFF1916at 790.929 kb on - strand, within GFF1916at 790.929 kb on - strand, within GFF1916at 791.102 kb on + strandat 791.103 kb on - strandat 791.182 kb on + strandat 791.182 kb on + strandat 791.182 kb on + strandat 791.183 kb on - strandat 791.183 kb on - strandat 791.183 kb on - strandat 791.215 kb on + strandat 791.216 kb on - strandat 791.384 kb on - strand, within GFF1917at 791.449 kb on + strand, within GFF1917at 791.450 kb on - strand, within GFF1917at 791.450 kb on - strand, within GFF1917at 792.226 kb on + strandat 792.226 kb on + strandat 792.227 kb on - strandat 792.313 kb on + strandat 792.313 kb on + strandat 792.314 kb on - strandat 792.314 kb on - strandat 792.314 kb on - strandat 792.365 kb on + strandat 792.365 kb on + strandat 792.365 kb on + strandat 792.365 kb on + strandat 792.366 kb on - strandat 792.366 kb on - strandat 792.366 kb on - strandat 792.366 kb on - strandat 792.366 kb on - strandat 792.366 kb on - strandat 792.366 kb on - strandat 792.508 kb on - strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.509 kb on + strandat 792.510 kb on - strandat 792.510 kb on - strandat 792.510 kb on - strandat 792.510 kb on - strandat 792.510 kb on - strandat 792.510 kb on - strandat 792.510 kb on - strandat 792.510 kb on - strandat 792.510 kb on - strandat 792.650 kb on + strand, within GFF1918at 792.650 kb on + strand, within GFF1918at 792.651 kb on - strand, within GFF1918at 792.752 kb on + strand, within GFF1918at 792.752 kb on + strand, within GFF1918at 792.752 kb on + strand, within GFF1918at 792.753 kb on - strand, within GFF1918at 792.753 kb on - strand, within GFF1918at 792.815 kb on + strand, within GFF1918at 792.816 kb on - strand, within GFF1918at 792.816 kb on - strand, within GFF1918at 792.816 kb on - strand, within GFF1918at 792.816 kb on - strand, within GFF1918at 792.920 kb on + strand, within GFF1918at 792.921 kb on - strand, within GFF1918at 792.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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790,115 + GFF1916 0.22 -2.6
790,115 + GFF1916 0.22 -0.8
790,115 + GFF1916 0.22 -2.1
790,115 + GFF1916 0.22 +0.2
790,115 + GFF1916 0.22 -2.4
790,116 - GFF1916 0.22 -2.3
790,116 - GFF1916 0.22 -2.0
790,116 - GFF1916 0.22 -1.6
790,116 - GFF1916 0.22 -2.0
790,116 - GFF1916 0.22 -1.5
790,116 - GFF1916 0.22 -1.6
790,116 - GFF1916 0.22 -1.3
790,145 + GFF1916 0.25 -2.0
790,145 + GFF1916 0.25 -2.1
790,146 - GFF1916 0.25 -0.3
790,160 + GFF1916 0.26 -3.6
790,160 + GFF1916 0.26 -2.4
790,160 + GFF1916 0.26 -1.1
790,160 + GFF1916 0.26 -2.5
790,161 - GFF1916 0.26 -1.6
790,161 - GFF1916 0.26 -1.9
790,161 - GFF1916 0.26 -1.3
790,161 - GFF1916 0.26 -0.4
790,161 - GFF1916 0.26 -1.1
790,367 + GFF1916 0.42 -2.0
790,367 + GFF1916 0.42 +0.1
790,367 + GFF1916 0.42 -1.1
790,367 + GFF1916 0.42 +0.1
790,367 + GFF1916 0.42 -1.8
790,367 + GFF1916 0.42 -0.6
790,368 - GFF1916 0.42 -2.0
790,368 - GFF1916 0.42 -1.6
790,368 - GFF1916 0.42 -2.1
790,368 - GFF1916 0.42 -2.0
790,368 - GFF1916 0.42 -0.7
790,368 - GFF1916 0.42 -1.6
790,368 - GFF1916 0.42 -1.0
790,368 - GFF1916 0.42 -2.2
790,556 + GFF1916 0.57 -3.3
790,557 - GFF1916 0.57 -1.3
790,557 - GFF1916 0.57 -2.4
790,557 - GFF1916 0.57 -1.4
790,592 + GFF1916 0.60 -0.7
790,928 + GFF1916 0.86 -1.2
790,928 + GFF1916 0.86 -0.6
790,928 + GFF1916 0.86 -2.5
790,928 + GFF1916 0.86 -2.1
790,928 + GFF1916 0.86 -1.1
790,928 + GFF1916 0.86 -1.7
790,928 + GFF1916 0.86 -1.7
790,928 + GFF1916 0.86 -1.7
790,929 - GFF1916 0.86 -1.7
790,929 - GFF1916 0.86 -0.3
790,929 - GFF1916 0.86 -1.7
790,929 - GFF1916 0.86 -1.7
791,102 + -0.0
791,103 - +0.4
791,182 + +0.5
791,182 + -0.7
791,182 + +1.7
791,183 - +0.1
791,183 - -0.5
791,183 - -0.0
791,215 + -0.1
791,216 - +0.9
791,384 - GFF1917 0.22 -1.1
791,449 + GFF1917 0.28 -0.2
791,450 - GFF1917 0.28 -1.2
791,450 - GFF1917 0.28 +0.1
792,226 + +0.3
792,226 + -1.1
792,227 - -0.3
792,313 + +0.3
792,313 + -0.4
792,314 - -1.9
792,314 - +0.1
792,314 - +0.1
792,365 + -1.0
792,365 + -1.9
792,365 + -1.3
792,365 + +0.6
792,366 - +0.1
792,366 - +0.1
792,366 - +0.3
792,366 - -1.1
792,366 - +1.3
792,366 - -0.4
792,366 - -0.0
792,508 - -0.2
792,509 + -0.1
792,509 + -0.4
792,509 + +0.2
792,509 + -0.1
792,509 + +1.1
792,509 + -0.1
792,509 + -0.6
792,509 + -0.1
792,509 + +0.6
792,509 + -0.2
792,509 + -1.0
792,509 + -0.1
792,509 + -0.1
792,509 + +0.6
792,509 + +1.4
792,510 - +0.8
792,510 - +0.1
792,510 - +0.5
792,510 - +0.6
792,510 - -0.4
792,510 - +1.0
792,510 - -0.3
792,510 - +0.7
792,510 - -0.3
792,650 + GFF1918 0.32 +1.5
792,650 + GFF1918 0.32 +0.6
792,651 - GFF1918 0.32 +0.6
792,752 + GFF1918 0.53 -0.3
792,752 + GFF1918 0.53 -0.4
792,752 + GFF1918 0.53 +0.2
792,753 - GFF1918 0.53 -0.7
792,753 - GFF1918 0.53 -0.2
792,815 + GFF1918 0.66 +0.0
792,816 - GFF1918 0.66 +0.1
792,816 - GFF1918 0.66 +0.6
792,816 - GFF1918 0.66 +0.9
792,816 - GFF1918 0.66 -0.6
792,920 + GFF1918 0.88 +0.4
792,921 - GFF1918 0.88 -1.4
792,973 - +0.3

Or see this region's nucleotide sequence