Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1787 and GFF1788 are separated by 5 nucleotides GFF1788 and GFF1789 are separated by 43 nucleotides GFF1789 and GFF1790 are separated by 110 nucleotides
GFF1787 - Nitrogen regulation protein NtrY (EC 2.7.3.-), at 650,891 to 653,179
GFF1787
GFF1788 - Probable proline rich signal peptide protein, at 653,185 to 653,862
GFF1788
GFF1789 - Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-), at 653,906 to 655,201
GFF1789
GFF1790 - Heat shock protein HtpX (EC 3.4.24.-), at 655,312 to 656,340
GFF1790
Position (kb) 653
654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 652.998 kb on + strand at 652.999 kb on - strand at 652.999 kb on - strand at 652.999 kb on - strand at 653.510 kb on + strand, within GFF1788 at 653.510 kb on + strand, within GFF1788 at 653.511 kb on - strand, within GFF1788 at 653.511 kb on - strand, within GFF1788 at 653.511 kb on - strand, within GFF1788 at 653.588 kb on + strand, within GFF1788 at 653.588 kb on + strand, within GFF1788 at 653.639 kb on + strand, within GFF1788 at 653.654 kb on + strand, within GFF1788 at 653.678 kb on + strand, within GFF1788 at 653.678 kb on + strand, within GFF1788 at 653.679 kb on - strand, within GFF1788 at 653.679 kb on - strand, within GFF1788 at 653.679 kb on - strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.696 kb on + strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.697 kb on - strand, within GFF1788 at 653.934 kb on + strand at 653.949 kb on + strand at 653.949 kb on + strand at 653.949 kb on + strand at 653.949 kb on + strand at 653.949 kb on + strand at 653.950 kb on - strand at 653.950 kb on - strand at 653.950 kb on - strand at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.105 kb on + strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.106 kb on - strand, within GFF1789 at 654.660 kb on + strand, within GFF1789 at 655.388 kb on + strand at 655.388 kb on + strand at 655.388 kb on + strand at 655.388 kb on + strand at 655.389 kb on - strand at 655.601 kb on + strand, within GFF1790 at 655.601 kb on + strand, within GFF1790 at 655.601 kb on + strand, within GFF1790 at 655.800 kb on + strand, within GFF1790 at 655.800 kb on + strand, within GFF1790
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 652,998 + -2.1 652,999 - -2.0 652,999 - -1.8 652,999 - -0.7 653,510 + GFF1788 0.48 +0.4 653,510 + GFF1788 0.48 +0.0 653,511 - GFF1788 0.48 -1.9 653,511 - GFF1788 0.48 -0.4 653,511 - GFF1788 0.48 -0.6 653,588 + GFF1788 0.59 -1.3 653,588 + GFF1788 0.59 -1.0 653,639 + GFF1788 0.67 -2.2 653,654 + GFF1788 0.69 -2.1 653,678 + GFF1788 0.73 -1.2 653,678 + GFF1788 0.73 -3.0 653,679 - GFF1788 0.73 -1.5 653,679 - GFF1788 0.73 -1.0 653,679 - GFF1788 0.73 -2.9 653,696 + GFF1788 0.75 -1.9 653,696 + GFF1788 0.75 -0.6 653,696 + GFF1788 0.75 +0.1 653,696 + GFF1788 0.75 -0.7 653,696 + GFF1788 0.75 -1.4 653,696 + GFF1788 0.75 -1.1 653,696 + GFF1788 0.75 +2.1 653,697 - GFF1788 0.76 -1.3 653,697 - GFF1788 0.76 -3.3 653,697 - GFF1788 0.76 -1.8 653,697 - GFF1788 0.76 -1.9 653,697 - GFF1788 0.76 -0.8 653,697 - GFF1788 0.76 -1.6 653,697 - GFF1788 0.76 -2.4 653,697 - GFF1788 0.76 -0.4 653,697 - GFF1788 0.76 -1.3 653,934 + -0.3 653,949 + +0.1 653,949 + -0.1 653,949 + +0.1 653,949 + +0.5 653,949 + -0.7 653,950 - +0.1 653,950 - +0.3 653,950 - -0.1 654,105 + GFF1789 0.15 +0.2 654,105 + GFF1789 0.15 +0.1 654,105 + GFF1789 0.15 -0.2 654,105 + GFF1789 0.15 +0.3 654,105 + GFF1789 0.15 -0.6 654,105 + GFF1789 0.15 -0.6 654,105 + GFF1789 0.15 -0.4 654,105 + GFF1789 0.15 -2.9 654,106 - GFF1789 0.15 -0.4 654,106 - GFF1789 0.15 -0.2 654,106 - GFF1789 0.15 -1.3 654,106 - GFF1789 0.15 +0.4 654,106 - GFF1789 0.15 +0.7 654,106 - GFF1789 0.15 -0.3 654,106 - GFF1789 0.15 -0.3 654,660 + GFF1789 0.58 -0.4 655,388 + -0.2 655,388 + +0.4 655,388 + +1.0 655,388 + -0.2 655,389 - -0.0 655,601 + GFF1790 0.28 +0.4 655,601 + GFF1790 0.28 +0.4 655,601 + GFF1790 0.28 -1.7 655,800 + GFF1790 0.47 +1.9 655,800 + GFF1790 0.47 +0.0
Or see this region's nucleotide sequence