Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1732

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1729 and GFF1730 are separated by 0 nucleotidesGFF1730 and GFF1731 are separated by 60 nucleotidesGFF1731 and GFF1732 are separated by 90 nucleotidesGFF1732 and GFF1733 are separated by 8 nucleotidesGFF1733 and GFF1734 are separated by 14 nucleotides GFF1729 - Glyoxalase/Bleomycin resistance protein/dioxygenase domain, at 585,015 to 585,470 GFF1729 GFF1730 - Mll3930 protein, at 585,471 to 585,836 GFF1730 GFF1731 - Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family, at 585,897 to 586,304 GFF1731 GFF1732 - Putative predicted metal-dependent hydrolase, at 586,395 to 587,288 GFF1732 GFF1733 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 587,297 to 588,046 GFF1733 GFF1734 - Histidinol-phosphatase (EC 3.1.3.15), at 588,061 to 588,645 GFF1734 Position (kb) 586 587 588Strain fitness (log2 ratio) -2 -1 0 1 2at 585.565 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.670 kb on + strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.671 kb on - strand, within GFF1730at 585.784 kb on + strand, within GFF1730at 585.784 kb on + strand, within GFF1730at 585.784 kb on + strand, within GFF1730at 585.785 kb on - strand, within GFF1730at 585.886 kb on + strandat 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.075 kb on + strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.076 kb on - strand, within GFF1731at 586.168 kb on + strand, within GFF1731at 586.168 kb on + strand, within GFF1731at 586.168 kb on + strand, within GFF1731at 586.169 kb on - strand, within GFF1731at 586.169 kb on - strand, within GFF1731at 586.228 kb on + strand, within GFF1731at 586.228 kb on + strand, within GFF1731at 586.228 kb on + strand, within GFF1731at 586.228 kb on + strand, within GFF1731at 586.228 kb on + strand, within GFF1731at 586.229 kb on - strand, within GFF1731at 586.229 kb on - strand, within GFF1731at 586.229 kb on - strand, within GFF1731at 586.229 kb on - strand, within GFF1731at 586.285 kb on + strandat 586.285 kb on + strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.286 kb on - strandat 586.320 kb on + strandat 586.320 kb on + strandat 586.321 kb on - strandat 586.321 kb on - strandat 586.321 kb on - strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.330 kb on + strandat 586.331 kb on - strandat 586.331 kb on - strandat 586.331 kb on - strandat 586.534 kb on + strand, within GFF1732at 586.534 kb on + strand, within GFF1732at 586.534 kb on + strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.535 kb on - strand, within GFF1732at 586.645 kb on + strand, within GFF1732at 586.645 kb on + strand, within GFF1732at 586.646 kb on - strand, within GFF1732at 586.879 kb on + strand, within GFF1732at 586.879 kb on + strand, within GFF1732at 586.880 kb on - strand, within GFF1732at 587.095 kb on + strand, within GFF1732at 587.095 kb on + strand, within GFF1732at 587.095 kb on + strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.096 kb on - strand, within GFF1732at 587.310 kb on + strandat 587.311 kb on - strandat 587.538 kb on + strand, within GFF1733at 587.538 kb on + strand, within GFF1733at 587.539 kb on - strand, within GFF1733at 587.539 kb on - strand, within GFF1733at 587.539 kb on - strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.715 kb on + strand, within GFF1733at 587.716 kb on - strand, within GFF1733at 587.716 kb on - strand, within GFF1733at 587.716 kb on - strand, within GFF1733at 587.716 kb on - strand, within GFF1733at 587.716 kb on - strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.739 kb on + strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.740 kb on - strand, within GFF1733at 587.825 kb on - strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.928 kb on + strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733at 587.929 kb on - strand, within GFF1733

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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585,565 + GFF1730 0.26 +0.4
585,670 + GFF1730 0.54 -0.5
585,670 + GFF1730 0.54 -0.9
585,670 + GFF1730 0.54 -0.5
585,670 + GFF1730 0.54 +0.5
585,670 + GFF1730 0.54 -0.1
585,670 + GFF1730 0.54 -0.2
585,670 + GFF1730 0.54 +0.3
585,670 + GFF1730 0.54 -0.1
585,671 - GFF1730 0.55 +0.1
585,671 - GFF1730 0.55 +0.7
585,671 - GFF1730 0.55 +0.3
585,671 - GFF1730 0.55 +0.3
585,671 - GFF1730 0.55 -2.2
585,671 - GFF1730 0.55 -0.1
585,671 - GFF1730 0.55 -0.2
585,671 - GFF1730 0.55 +0.7
585,671 - GFF1730 0.55 +0.4
585,671 - GFF1730 0.55 -0.9
585,671 - GFF1730 0.55 +0.1
585,671 - GFF1730 0.55 -0.2
585,784 + GFF1730 0.86 -0.4
585,784 + GFF1730 0.86 -0.3
585,784 + GFF1730 0.86 -2.0
585,785 - GFF1730 0.86 -0.1
585,886 + -1.0
586,075 + GFF1731 0.44 +0.2
586,075 + GFF1731 0.44 -0.2
586,075 + GFF1731 0.44 -0.0
586,075 + GFF1731 0.44 +0.6
586,075 + GFF1731 0.44 -0.7
586,075 + GFF1731 0.44 -0.6
586,075 + GFF1731 0.44 -0.9
586,076 - GFF1731 0.44 -0.5
586,076 - GFF1731 0.44 +0.2
586,076 - GFF1731 0.44 -1.0
586,076 - GFF1731 0.44 -0.2
586,076 - GFF1731 0.44 -0.5
586,076 - GFF1731 0.44 +0.5
586,076 - GFF1731 0.44 -0.1
586,076 - GFF1731 0.44 -0.3
586,076 - GFF1731 0.44 -0.4
586,076 - GFF1731 0.44 -1.0
586,076 - GFF1731 0.44 +1.1
586,076 - GFF1731 0.44 -0.5
586,076 - GFF1731 0.44 +0.2
586,168 + GFF1731 0.66 +0.8
586,168 + GFF1731 0.66 -1.4
586,168 + GFF1731 0.66 +0.1
586,169 - GFF1731 0.67 -0.3
586,169 - GFF1731 0.67 -1.7
586,228 + GFF1731 0.81 -1.3
586,228 + GFF1731 0.81 +0.1
586,228 + GFF1731 0.81 -1.4
586,228 + GFF1731 0.81 -0.2
586,228 + GFF1731 0.81 -0.3
586,229 - GFF1731 0.81 -0.7
586,229 - GFF1731 0.81 -2.5
586,229 - GFF1731 0.81 +0.5
586,229 - GFF1731 0.81 +0.9
586,285 + -0.0
586,285 + +0.1
586,286 - +0.1
586,286 - +0.5
586,286 - -2.1
586,286 - +0.0
586,286 - +0.0
586,286 - -0.4
586,286 - -0.5
586,320 + -0.0
586,320 + -0.3
586,321 - +0.0
586,321 - -0.3
586,321 - -0.2
586,330 + -0.0
586,330 + +0.0
586,330 + -0.1
586,330 + +1.1
586,330 + +0.3
586,330 + -0.4
586,330 + -0.0
586,331 - +0.4
586,331 - -0.3
586,331 - -0.1
586,534 + GFF1732 0.16 +0.4
586,534 + GFF1732 0.16 -2.3
586,534 + GFF1732 0.16 -0.1
586,535 - GFF1732 0.16 -0.3
586,535 - GFF1732 0.16 -0.5
586,535 - GFF1732 0.16 +0.1
586,535 - GFF1732 0.16 -0.1
586,645 + GFF1732 0.28 -0.9
586,645 + GFF1732 0.28 +1.1
586,646 - GFF1732 0.28 -0.3
586,879 + GFF1732 0.54 -0.2
586,879 + GFF1732 0.54 +0.1
586,880 - GFF1732 0.54 +0.0
587,095 + GFF1732 0.78 +0.2
587,095 + GFF1732 0.78 +1.1
587,095 + GFF1732 0.78 +0.5
587,096 - GFF1732 0.78 +0.2
587,096 - GFF1732 0.78 -0.9
587,096 - GFF1732 0.78 -0.3
587,096 - GFF1732 0.78 +0.0
587,096 - GFF1732 0.78 +2.0
587,096 - GFF1732 0.78 +0.0
587,310 + +0.0
587,311 - +0.1
587,538 + GFF1733 0.32 -1.0
587,538 + GFF1733 0.32 -0.2
587,539 - GFF1733 0.32 +1.3
587,539 - GFF1733 0.32 -2.0
587,539 - GFF1733 0.32 -0.9
587,715 + GFF1733 0.56 -0.4
587,715 + GFF1733 0.56 -0.5
587,715 + GFF1733 0.56 -0.4
587,715 + GFF1733 0.56 -1.0
587,715 + GFF1733 0.56 +0.1
587,715 + GFF1733 0.56 -1.4
587,715 + GFF1733 0.56 -0.3
587,715 + GFF1733 0.56 -1.4
587,715 + GFF1733 0.56 -1.3
587,715 + GFF1733 0.56 -1.3
587,715 + GFF1733 0.56 -1.0
587,715 + GFF1733 0.56 -0.8
587,716 - GFF1733 0.56 -0.8
587,716 - GFF1733 0.56 +0.0
587,716 - GFF1733 0.56 -0.3
587,716 - GFF1733 0.56 -0.1
587,716 - GFF1733 0.56 -0.8
587,739 + GFF1733 0.59 +0.3
587,739 + GFF1733 0.59 -0.4
587,739 + GFF1733 0.59 -0.9
587,739 + GFF1733 0.59 -1.0
587,739 + GFF1733 0.59 -0.6
587,739 + GFF1733 0.59 -0.4
587,740 - GFF1733 0.59 +0.7
587,740 - GFF1733 0.59 -0.7
587,740 - GFF1733 0.59 +1.1
587,740 - GFF1733 0.59 -0.6
587,740 - GFF1733 0.59 -0.1
587,740 - GFF1733 0.59 -0.7
587,825 - GFF1733 0.70 +0.6
587,928 + GFF1733 0.84 -0.5
587,928 + GFF1733 0.84 -0.5
587,928 + GFF1733 0.84 -0.6
587,928 + GFF1733 0.84 -0.7
587,928 + GFF1733 0.84 -1.0
587,928 + GFF1733 0.84 -0.4
587,928 + GFF1733 0.84 -0.7
587,929 - GFF1733 0.84 -0.7
587,929 - GFF1733 0.84 +0.7
587,929 - GFF1733 0.84 +0.3
587,929 - GFF1733 0.84 -0.4
587,929 - GFF1733 0.84 +0.1
587,929 - GFF1733 0.84 -1.6
587,929 - GFF1733 0.84 -1.0
587,929 - GFF1733 0.84 +0.4

Or see this region's nucleotide sequence