Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1672 and GFF1673 overlap by 4 nucleotides GFF1673 and GFF1674 are separated by 105 nucleotides GFF1674 and GFF1675 overlap by 4 nucleotides GFF1675 and GFF1676 are separated by 301 nucleotides
GFF1672 - Two-component sensor PilS, at 526,213 to 527,697
GFF1672
GFF1673 - Nitrogen regulation protein NR(I), at 527,694 to 528,341
GFF1673
GFF1674 - (Y14336) putative extracellular protein containing predicted 35aa signal peptide, at 528,447 to 528,941
GFF1674
GFF1675 - Ankyrin, at 528,938 to 529,630
GFF1675
GFF1676 - Tyrosyl-tRNA synthetase (EC 6.1.1.1), at 529,932 to 531,182
GFF1676
Position (kb) 528
529 Strain fitness (log2 ratio) -1
0
1 at 527.522 kb on + strand, within GFF1672 at 527.522 kb on + strand, within GFF1672 at 527.522 kb on + strand, within GFF1672 at 527.523 kb on - strand, within GFF1672 at 527.523 kb on - strand, within GFF1672 at 528.126 kb on + strand, within GFF1673 at 528.126 kb on + strand, within GFF1673 at 528.126 kb on + strand, within GFF1673 at 528.126 kb on + strand, within GFF1673 at 528.297 kb on + strand at 528.298 kb on - strand at 528.339 kb on + strand at 528.339 kb on + strand at 528.340 kb on - strand at 528.340 kb on - strand at 528.340 kb on - strand at 528.345 kb on + strand at 528.345 kb on + strand at 528.346 kb on - strand at 528.361 kb on + strand at 528.396 kb on + strand at 528.600 kb on + strand, within GFF1674 at 528.600 kb on + strand, within GFF1674 at 528.601 kb on - strand, within GFF1674 at 528.798 kb on + strand, within GFF1674 at 528.798 kb on + strand, within GFF1674 at 528.799 kb on - strand, within GFF1674 at 529.040 kb on + strand, within GFF1675 at 529.041 kb on - strand, within GFF1675 at 529.335 kb on - strand, within GFF1675 at 529.586 kb on + strand at 529.587 kb on - strand at 529.729 kb on - strand at 529.729 kb on - strand at 529.729 kb on - strand at 529.729 kb on - strand at 529.729 kb on - strand at 529.729 kb on - strand at 529.915 kb on + strand at 529.915 kb on + strand at 529.916 kb on - strand at 529.916 kb on - strand at 529.916 kb on - strand at 529.933 kb on + strand at 529.933 kb on + strand at 529.934 kb on - strand at 529.934 kb on - strand at 529.934 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 527,522 + GFF1672 0.88 -0.0 527,522 + GFF1672 0.88 +0.2 527,522 + GFF1672 0.88 -0.9 527,523 - GFF1672 0.88 -0.4 527,523 - GFF1672 0.88 +0.1 528,126 + GFF1673 0.67 -1.3 528,126 + GFF1673 0.67 +0.4 528,126 + GFF1673 0.67 -1.0 528,126 + GFF1673 0.67 -0.5 528,297 + -0.1 528,298 - -0.1 528,339 + -1.1 528,339 + +0.3 528,340 - +0.5 528,340 - -0.6 528,340 - +0.7 528,345 + -0.9 528,345 + -0.2 528,346 - -0.2 528,361 + -0.0 528,396 + -0.1 528,600 + GFF1674 0.31 +0.5 528,600 + GFF1674 0.31 -0.0 528,601 - GFF1674 0.31 +1.7 528,798 + GFF1674 0.71 +0.5 528,798 + GFF1674 0.71 +0.5 528,799 - GFF1674 0.71 -0.6 529,040 + GFF1675 0.15 -1.0 529,041 - GFF1675 0.15 -0.5 529,335 - GFF1675 0.57 -0.5 529,586 + -0.2 529,587 - +0.7 529,729 - -1.2 529,729 - -0.0 529,729 - +0.1 529,729 - -0.0 529,729 - +0.6 529,729 - +0.3 529,915 + +0.5 529,915 + -0.5 529,916 - +0.8 529,916 - -0.1 529,916 - +0.2 529,933 + -0.1 529,933 + +0.1 529,934 - -0.2 529,934 - +0.8 529,934 - -0.5
Or see this region's nucleotide sequence