Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1668 and GFF1669 overlap by 1 nucleotides GFF1669 and GFF1670 overlap by 4 nucleotides GFF1670 and GFF1671 overlap by 4 nucleotides GFF1671 and GFF1672 are separated by 41 nucleotides
GFF1668 - hypothetical protein, at 523,961 to 524,347
GFF1668
GFF1669 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 524,347 to 524,805
GFF1669
GFF1670 - D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1), at 524,802 to 525,245
GFF1670
GFF1671 - Cobalt-zinc-cadmium resistance protein, at 525,242 to 526,171
GFF1671
GFF1672 - Two-component sensor PilS, at 526,213 to 527,697
GFF1672
Position (kb) 525
526
527 Strain fitness (log2 ratio) -1
0
1
2 at 524.243 kb on + strand, within GFF1668 at 524.244 kb on - strand, within GFF1668 at 524.244 kb on - strand, within GFF1668 at 524.797 kb on + strand at 524.797 kb on + strand at 524.798 kb on - strand at 524.804 kb on - strand at 524.804 kb on - strand at 525.927 kb on + strand, within GFF1671 at 525.927 kb on + strand, within GFF1671 at 525.927 kb on + strand, within GFF1671 at 525.927 kb on + strand, within GFF1671 at 525.927 kb on + strand, within GFF1671 at 525.928 kb on - strand, within GFF1671 at 525.928 kb on - strand, within GFF1671 at 525.928 kb on - strand, within GFF1671 at 525.948 kb on + strand, within GFF1671 at 525.949 kb on - strand, within GFF1671 at 526.472 kb on - strand, within GFF1672 at 526.606 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.640 kb on - strand, within GFF1672 at 526.640 kb on - strand, within GFF1672
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 524,243 + GFF1668 0.73 -1.0 524,244 - GFF1668 0.73 -0.3 524,244 - GFF1668 0.73 -0.7 524,797 + -0.7 524,797 + +0.1 524,798 - -0.6 524,804 - -0.6 524,804 - -0.3 525,927 + GFF1671 0.74 +1.1 525,927 + GFF1671 0.74 -0.3 525,927 + GFF1671 0.74 -1.1 525,927 + GFF1671 0.74 +0.4 525,927 + GFF1671 0.74 +0.0 525,928 - GFF1671 0.74 -0.2 525,928 - GFF1671 0.74 +0.3 525,928 - GFF1671 0.74 +2.7 525,948 + GFF1671 0.76 +0.1 525,949 - GFF1671 0.76 -0.1 526,472 - GFF1672 0.17 -0.1 526,606 + GFF1672 0.26 -0.0 526,639 + GFF1672 0.29 +0.0 526,639 + GFF1672 0.29 +0.0 526,639 + GFF1672 0.29 -0.0 526,639 + GFF1672 0.29 +0.5 526,639 + GFF1672 0.29 -1.2 526,639 + GFF1672 0.29 +0.0 526,639 + GFF1672 0.29 -0.8 526,640 - GFF1672 0.29 -0.1 526,640 - GFF1672 0.29 +0.9
Or see this region's nucleotide sequence