Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1616 and GFF1617 are separated by 710 nucleotides GFF1617 and GFF1618 are separated by 0 nucleotides
GFF1616 - hypothetical protein, at 470,716 to 471,042
GFF1616
GFF1617 - hypothetical protein, at 471,753 to 471,893
GFF1617
GFF1618 - Sensory box histidine kinase/response regulator, at 471,894 to 473,879
GFF1618
Position (kb) 471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 470.852 kb on - strand, within GFF1616 at 470.932 kb on + strand, within GFF1616 at 470.932 kb on + strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 470.933 kb on - strand, within GFF1616 at 471.040 kb on + strand at 471.040 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.315 kb on - strand at 471.441 kb on + strand at 471.441 kb on + strand at 471.441 kb on + strand at 471.441 kb on + strand at 471.442 kb on - strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.453 kb on + strand at 471.454 kb on - strand at 471.472 kb on - strand at 471.546 kb on - strand at 471.570 kb on + strand at 471.570 kb on + strand at 471.570 kb on + strand at 471.570 kb on + strand at 471.571 kb on - strand at 471.571 kb on - strand at 471.571 kb on - strand at 471.571 kb on - strand at 471.576 kb on + strand at 471.577 kb on - strand at 471.577 kb on - strand at 471.608 kb on - strand at 471.623 kb on - strand at 471.623 kb on - strand at 471.623 kb on - strand at 471.647 kb on - strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.648 kb on + strand at 471.649 kb on - strand at 471.649 kb on - strand at 471.649 kb on - strand at 471.649 kb on - strand at 471.649 kb on - strand at 471.649 kb on - strand at 471.762 kb on + strand at 471.762 kb on + strand at 471.808 kb on + strand, within GFF1617 at 472.089 kb on + strand at 472.089 kb on + strand at 472.089 kb on + strand at 472.089 kb on + strand at 472.089 kb on + strand at 472.089 kb on + strand at 472.089 kb on + strand at 472.089 kb on + strand at 472.089 kb on + strand at 472.089 kb on + strand at 472.090 kb on - strand at 472.090 kb on - strand at 472.090 kb on - strand at 472.090 kb on - strand at 472.090 kb on - strand at 472.090 kb on - strand at 472.090 kb on - strand at 472.090 kb on - strand at 472.090 kb on - strand at 472.090 kb on - strand at 472.090 kb on - strand at 472.144 kb on - strand, within GFF1618 at 472.198 kb on - strand, within GFF1618 at 472.198 kb on - strand, within GFF1618 at 472.198 kb on - strand, within GFF1618 at 472.239 kb on + strand, within GFF1618 at 472.240 kb on - strand, within GFF1618 at 472.323 kb on + strand, within GFF1618 at 472.323 kb on + strand, within GFF1618 at 472.324 kb on - strand, within GFF1618 at 472.365 kb on + strand, within GFF1618 at 472.366 kb on - strand, within GFF1618 at 472.366 kb on - strand, within GFF1618 at 472.366 kb on - strand, within GFF1618 at 472.366 kb on - strand, within GFF1618 at 472.527 kb on + strand, within GFF1618 at 472.528 kb on - strand, within GFF1618 at 472.528 kb on - strand, within GFF1618 at 472.590 kb on + strand, within GFF1618 at 472.590 kb on + strand, within GFF1618 at 472.590 kb on + strand, within GFF1618 at 472.590 kb on + strand, within GFF1618 at 472.591 kb on - strand, within GFF1618 at 472.821 kb on + strand, within GFF1618 at 472.821 kb on + strand, within GFF1618 at 472.821 kb on + strand, within GFF1618 at 472.821 kb on + strand, within GFF1618 at 472.821 kb on + strand, within GFF1618 at 472.822 kb on - strand, within GFF1618 at 472.822 kb on - strand, within GFF1618 at 472.822 kb on - strand, within GFF1618 at 472.822 kb on - strand, within GFF1618 at 472.822 kb on - strand, within GFF1618 at 472.822 kb on - strand, within GFF1618 at 472.822 kb on - strand, within GFF1618 at 472.866 kb on + strand, within GFF1618 at 472.866 kb on + strand, within GFF1618 at 472.867 kb on - strand, within GFF1618 at 472.867 kb on - strand, within GFF1618
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 470,852 - GFF1616 0.42 -0.3 470,932 + GFF1616 0.66 +0.7 470,932 + GFF1616 0.66 +0.1 470,933 - GFF1616 0.66 +0.2 470,933 - GFF1616 0.66 -0.9 470,933 - GFF1616 0.66 +0.5 470,933 - GFF1616 0.66 -1.6 471,040 + +0.4 471,040 + +0.2 471,314 + -0.0 471,314 + -0.1 471,314 + +0.0 471,315 - -0.4 471,315 - -0.2 471,315 - +0.3 471,315 - +0.7 471,315 - -0.1 471,315 - -0.1 471,441 + -0.0 471,441 + +0.4 471,441 + +0.5 471,441 + +0.7 471,442 - +0.0 471,453 + +1.3 471,453 + +0.6 471,453 + +0.3 471,453 + +1.0 471,453 + +0.2 471,453 + -0.3 471,453 + -0.4 471,454 - -0.0 471,472 - +0.4 471,546 - +0.3 471,570 + -0.3 471,570 + -0.4 471,570 + -0.3 471,570 + +1.2 471,571 - +0.1 471,571 - +0.4 471,571 - +0.1 471,571 - +0.6 471,576 + +0.6 471,577 - -0.6 471,577 - -0.6 471,608 - -0.6 471,623 - -0.2 471,623 - -0.3 471,623 - +0.8 471,647 - +0.1 471,648 + +1.3 471,648 + +0.3 471,648 + +0.2 471,648 + -0.3 471,648 + +1.2 471,648 + -0.7 471,648 + +0.6 471,649 - -1.1 471,649 - -1.1 471,649 - +0.2 471,649 - +0.8 471,649 - +0.2 471,649 - -1.3 471,762 + -0.2 471,762 + +0.2 471,808 + GFF1617 0.39 +0.7 472,089 + +0.6 472,089 + -0.2 472,089 + -0.2 472,089 + +0.2 472,089 + +0.4 472,089 + -0.6 472,089 + -0.5 472,089 + -0.0 472,089 + +0.3 472,089 + +0.1 472,090 - +0.6 472,090 - +0.3 472,090 - -0.9 472,090 - -0.3 472,090 - +0.1 472,090 - +0.2 472,090 - -3.0 472,090 - +0.3 472,090 - -0.2 472,090 - -0.5 472,090 - -0.1 472,144 - GFF1618 0.13 -0.3 472,198 - GFF1618 0.15 -0.1 472,198 - GFF1618 0.15 +0.8 472,198 - GFF1618 0.15 +0.1 472,239 + GFF1618 0.17 -0.1 472,240 - GFF1618 0.17 -0.6 472,323 + GFF1618 0.22 -1.5 472,323 + GFF1618 0.22 -0.7 472,324 - GFF1618 0.22 -0.5 472,365 + GFF1618 0.24 -0.2 472,366 - GFF1618 0.24 +0.0 472,366 - GFF1618 0.24 +1.4 472,366 - GFF1618 0.24 +0.5 472,366 - GFF1618 0.24 +1.3 472,527 + GFF1618 0.32 +0.4 472,528 - GFF1618 0.32 -0.0 472,528 - GFF1618 0.32 -0.2 472,590 + GFF1618 0.35 +0.0 472,590 + GFF1618 0.35 -0.5 472,590 + GFF1618 0.35 +0.5 472,590 + GFF1618 0.35 -0.3 472,591 - GFF1618 0.35 -0.1 472,821 + GFF1618 0.47 -0.0 472,821 + GFF1618 0.47 +0.0 472,821 + GFF1618 0.47 +0.7 472,821 + GFF1618 0.47 -0.4 472,821 + GFF1618 0.47 +0.6 472,822 - GFF1618 0.47 -1.5 472,822 - GFF1618 0.47 -1.7 472,822 - GFF1618 0.47 -0.4 472,822 - GFF1618 0.47 +0.3 472,822 - GFF1618 0.47 -0.1 472,822 - GFF1618 0.47 -0.5 472,822 - GFF1618 0.47 +0.1 472,866 + GFF1618 0.49 -0.1 472,866 + GFF1618 0.49 -0.9 472,867 - GFF1618 0.49 +0.1 472,867 - GFF1618 0.49 -0.0
Or see this region's nucleotide sequence