Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1570 and GFF1571 are separated by 115 nucleotides GFF1571 and GFF1572 are separated by 27 nucleotides
GFF1570 - Tricarboxylate transport protein TctC, at 424,965 to 425,957
GFF1570
GFF1571 - Hypothetical Nudix-like regulator, at 426,073 to 427,095
GFF1571
GFF1572 - NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase, at 427,123 to 428,838
GFF1572
Position (kb) 426
427
428 Strain fitness (log2 ratio) -2
-1
0
1 at 425.131 kb on + strand, within GFF1570 at 425.387 kb on - strand, within GFF1570 at 425.473 kb on + strand, within GFF1570 at 425.473 kb on + strand, within GFF1570 at 425.473 kb on + strand, within GFF1570 at 425.474 kb on - strand, within GFF1570 at 425.569 kb on + strand, within GFF1570 at 425.569 kb on + strand, within GFF1570 at 425.569 kb on + strand, within GFF1570 at 425.570 kb on - strand, within GFF1570 at 425.570 kb on - strand, within GFF1570 at 425.570 kb on - strand, within GFF1570 at 425.617 kb on + strand, within GFF1570 at 425.617 kb on + strand, within GFF1570 at 425.675 kb on - strand, within GFF1570 at 425.978 kb on - strand at 425.982 kb on - strand at 425.982 kb on - strand at 425.982 kb on - strand at 426.026 kb on - strand at 426.026 kb on - strand at 426.026 kb on - strand at 426.026 kb on - strand at 426.026 kb on - strand at 426.074 kb on + strand at 426.075 kb on - strand at 426.492 kb on - strand, within GFF1571 at 426.492 kb on - strand, within GFF1571 at 426.588 kb on - strand, within GFF1571 at 426.659 kb on + strand, within GFF1571 at 426.660 kb on - strand, within GFF1571 at 426.848 kb on + strand, within GFF1571 at 427.377 kb on - strand, within GFF1572 at 427.514 kb on + strand, within GFF1572 at 427.515 kb on - strand, within GFF1572
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 425,131 + GFF1570 0.17 -0.5 425,387 - GFF1570 0.42 +0.2 425,473 + GFF1570 0.51 -0.4 425,473 + GFF1570 0.51 -0.0 425,473 + GFF1570 0.51 -0.1 425,474 - GFF1570 0.51 -0.1 425,569 + GFF1570 0.61 +0.0 425,569 + GFF1570 0.61 -0.1 425,569 + GFF1570 0.61 -0.9 425,570 - GFF1570 0.61 -0.0 425,570 - GFF1570 0.61 +0.1 425,570 - GFF1570 0.61 -0.6 425,617 + GFF1570 0.66 +0.1 425,617 + GFF1570 0.66 -0.3 425,675 - GFF1570 0.72 -0.1 425,978 - +0.2 425,982 - +0.4 425,982 - +0.3 425,982 - -1.1 426,026 - +0.1 426,026 - -0.6 426,026 - -1.0 426,026 - -0.6 426,026 - -0.3 426,074 + +0.7 426,075 - +0.2 426,492 - GFF1571 0.41 +0.5 426,492 - GFF1571 0.41 +1.1 426,588 - GFF1571 0.50 +0.5 426,659 + GFF1571 0.57 -0.6 426,660 - GFF1571 0.57 +0.5 426,848 + GFF1571 0.76 -2.1 427,377 - GFF1572 0.15 +0.2 427,514 + GFF1572 0.23 +0.3 427,515 - GFF1572 0.23 -0.1
Or see this region's nucleotide sequence