Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1529 and GFF1530 overlap by 4 nucleotides GFF1530 and GFF1531 are separated by 96 nucleotides GFF1531 and GFF1532 are separated by 9 nucleotides
GFF1529 - Putative transcriptional regulator, at 384,053 to 384,970
GFF1529
GFF1530 - HTH-type transcriptional regulator IlvY, at 384,967 to 385,863
GFF1530
GFF1531 - putative exported protein, at 385,960 to 386,955
GFF1531
GFF1532 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 386,965 to 388,581
GFF1532
Position (kb) 385
386
387 Strain fitness (log2 ratio) -1
0
1 at 386.446 kb on + strand, within GFF1531 at 386.446 kb on + strand, within GFF1531 at 386.737 kb on + strand, within GFF1531 at 387.211 kb on + strand, within GFF1532 at 387.259 kb on + strand, within GFF1532 at 387.296 kb on - strand, within GFF1532 at 387.296 kb on - strand, within GFF1532 at 387.326 kb on - strand, within GFF1532 at 387.326 kb on - strand, within GFF1532 at 387.484 kb on + strand, within GFF1532 at 387.485 kb on - strand, within GFF1532 at 387.638 kb on - strand, within GFF1532 at 387.638 kb on - strand, within GFF1532 at 387.638 kb on - strand, within GFF1532 at 387.638 kb on - strand, within GFF1532 at 387.766 kb on + strand, within GFF1532 at 387.767 kb on - strand, within GFF1532 at 387.916 kb on + strand, within GFF1532
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 386,446 + GFF1531 0.49 +0.9 386,446 + GFF1531 0.49 -1.2 386,737 + GFF1531 0.78 +0.8 387,211 + GFF1532 0.15 +0.3 387,259 + GFF1532 0.18 +0.1 387,296 - GFF1532 0.20 -0.3 387,296 - GFF1532 0.20 +0.5 387,326 - GFF1532 0.22 -0.2 387,326 - GFF1532 0.22 +0.8 387,484 + GFF1532 0.32 +0.1 387,485 - GFF1532 0.32 -0.1 387,638 - GFF1532 0.42 -1.3 387,638 - GFF1532 0.42 +0.5 387,638 - GFF1532 0.42 +0.6 387,638 - GFF1532 0.42 +0.3 387,766 + GFF1532 0.50 +1.5 387,767 - GFF1532 0.50 -0.0 387,916 + GFF1532 0.59 +0.7
Or see this region's nucleotide sequence