Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1519

Experiment: Ying_Others16 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 2
372,653	-				+0.1
372,680	+				+0.2
372,681	-				-0.1
372,681	-				-1.3
372,689	-				+0.1
372,689	-				+0.5
372,719	-				+1.4
372,743	+				-0.6
372,743	+				+0.7
372,743	+				-0.3
372,744	-				+0.6
372,744	-				+1.5
372,744	-				+0.0
372,744	-				-0.6
372,756	+				-0.6
372,757	-				+0.5
372,777	+				+0.2
372,777	+				-1.5
372,801	-				+0.0
372,801	-				+1.4
372,831	+				+0.1
372,832	-				-0.1
372,873	-				+0.3
372,908	+				+0.4
372,909	-				+0.5
372,930	+				+0.4
372,931	-				-0.2
372,931	-				-0.2
372,961	+				-0.3
372,961	+				+0.2
372,961	+				-0.3
372,961	+				+1.2
372,961	+				-0.3
372,961	+				-0.5
372,961	+				+1.1
372,961	+				-0.1
372,961	+				-0.1
372,962	-				-0.9
372,962	-				+0.1
372,962	-				+0.3
372,962	-				+0.7
372,962	-				+0.1
372,968	+				-0.1
372,968	+				+1.1
372,993	+				-0.2
372,993	+				-0.3
372,993	+				-0.2
372,993	+				+0.3
372,994	-				+0.6
373,091	+				+0.7
373,091	+				-0.3
373,091	+				-0.2
373,092	-				+0.1
373,092	-				+0.4
373,092	-				-0.1
373,101	+				-0.2
373,102	-				+0.1
373,102	-				+0.3
373,102	-				-0.3
373,117	+				-0.2
373,118	-				-0.1
373,189	+				+0.2
373,189	+				-0.2
373,196	+				+0.9
373,196	+				+0.1
373,197	-				+0.2
373,197	-				-0.0
373,197	-				-2.3
373,197	-				-0.2
373,197	-				-0.2
373,204	+				+0.1
373,227	+				-0.1
373,229	-				-0.2
373,273	+				+1.2
373,372	+				-0.2
373,372	+				+1.2
373,373	-				+0.7
373,373	-				+1.4
373,373	-				+0.5
373,376	+				-0.3
373,377	-				+0.1
373,377	-				-0.2
373,419	-				+0.4
373,461	+				+0.1
373,461	+				+0.6
373,461	+				+0.3
373,461	+				-0.0
373,462	-				-0.2
373,516	+				+2.1
373,516	+				-0.1
373,516	+				-0.2
373,516	+				-0.2
373,516	+				+0.7
373,517	-				+0.7
373,517	-				+1.0
373,517	-				+0.2
373,517	-				-0.6
373,667	+		GFF1519	0.15	+0.0
373,667	+		GFF1519	0.15	+0.4
373,667	+		GFF1519	0.15	+0.1
373,668	-		GFF1519	0.15	+0.3
373,908	+		GFF1519	0.69	+1.7
374,288	-				+1.3
374,288	-				+0.0
374,301	+				+0.7
374,301	+				-0.5
374,301	+				-0.3
374,301	+				-0.1
374,301	+				-0.2
374,302	-				+0.1
374,302	-				+0.3
374,302	-				-0.8
374,302	-				-0.5
374,545	-		GFF1520	0.15	+0.1
374,545	-		GFF1520	0.15	+1.2
374,625	+		GFF1520	0.20	+0.4
374,626	-		GFF1520	0.20	-1.9
374,673	+		GFF1520	0.23	+0.0
374,673	+		GFF1520	0.23	-0.3
374,673	+		GFF1520	0.23	+0.2
374,673	+		GFF1520	0.23	-0.8
374,673	+		GFF1520	0.23	+0.5
374,674	-		GFF1520	0.23	+0.3
374,706	+		GFF1520	0.25	+0.9
374,706	+		GFF1520	0.25	+1.0
374,707	-		GFF1520	0.25	-0.7
374,707	-		GFF1520	0.25	+0.1
374,728	-		GFF1520	0.26	+0.2
374,728	-		GFF1520	0.26	-0.3
374,883	+		GFF1520	0.35	+0.1