Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1490 and GFF1491 are separated by 204 nucleotides GFF1491 and GFF1492 overlap by 4 nucleotides GFF1492 and GFF1493 overlap by 4 nucleotides
GFF1490 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 338,926 to 339,906
GFF1490
GFF1491 - Poly(3-hydroxybutyrate) depolymerase, at 340,111 to 341,157
GFF1491
GFF1492 - FIG00771309: hypothetical protein, at 341,154 to 341,966
GFF1492
GFF1493 - Histidinol-phosphate aminotransferase (EC 2.6.1.9), at 341,963 to 343,036
GFF1493
Position (kb) 340
341
342 Strain fitness (log2 ratio) -1
0
1 at 339.134 kb on + strand, within GFF1490 at 339.371 kb on + strand, within GFF1490 at 339.371 kb on + strand, within GFF1490 at 339.372 kb on - strand, within GFF1490 at 339.372 kb on - strand, within GFF1490 at 339.791 kb on + strand, within GFF1490 at 340.309 kb on + strand, within GFF1491 at 340.447 kb on + strand, within GFF1491 at 340.495 kb on + strand, within GFF1491 at 340.496 kb on - strand, within GFF1491 at 340.568 kb on + strand, within GFF1491 at 340.568 kb on + strand, within GFF1491 at 340.569 kb on - strand, within GFF1491 at 340.569 kb on - strand, within GFF1491 at 340.570 kb on + strand, within GFF1491 at 341.328 kb on + strand, within GFF1492 at 341.454 kb on + strand, within GFF1492 at 341.919 kb on + strand at 342.131 kb on + strand, within GFF1493
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 339,134 + GFF1490 0.21 -0.0 339,371 + GFF1490 0.45 +0.2 339,371 + GFF1490 0.45 -0.2 339,372 - GFF1490 0.45 +0.2 339,372 - GFF1490 0.45 -1.3 339,791 + GFF1490 0.88 +0.1 340,309 + GFF1491 0.19 -0.1 340,447 + GFF1491 0.32 +0.6 340,495 + GFF1491 0.37 +0.3 340,496 - GFF1491 0.37 +1.3 340,568 + GFF1491 0.44 -0.4 340,568 + GFF1491 0.44 -0.6 340,569 - GFF1491 0.44 +0.3 340,569 - GFF1491 0.44 -0.1 340,570 + GFF1491 0.44 -0.5 341,328 + GFF1492 0.21 -0.6 341,454 + GFF1492 0.37 -0.6 341,919 + +0.2 342,131 + GFF1493 0.16 -0.2
Or see this region's nucleotide sequence