Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1384 and GFF1385 are separated by 4 nucleotides GFF1385 and GFF1386 are separated by 59 nucleotides GFF1386 and GFF1387 are separated by 103 nucleotides
GFF1384 - General secretion pathway protein I, at 238,948 to 239,316
GFF1384
GFF1385 - General secretion pathway protein J, at 239,321 to 240,052
GFF1385
GFF1386 - General secretion pathway protein K, at 240,112 to 241,113
GFF1386
GFF1387 - General secretion pathway protein L, at 241,217 to 242,524
GFF1387
Position (kb) 240
241
242 Strain fitness (log2 ratio) -1
0
1 at 239.858 kb on + strand, within GFF1385 at 239.859 kb on - strand, within GFF1385 at 239.859 kb on - strand, within GFF1385 at 239.859 kb on - strand, within GFF1385 at 239.859 kb on - strand, within GFF1385 at 240.601 kb on + strand, within GFF1386 at 240.602 kb on - strand, within GFF1386 at 240.973 kb on + strand, within GFF1386 at 241.141 kb on + strand at 241.141 kb on + strand at 241.141 kb on + strand at 241.142 kb on - strand at 241.142 kb on - strand at 241.167 kb on + strand at 241.167 kb on + strand at 241.168 kb on - strand at 241.168 kb on - strand at 241.168 kb on - strand at 241.168 kb on - strand at 241.168 kb on - strand at 241.192 kb on - strand at 241.192 kb on - strand at 241.718 kb on + strand, within GFF1387 at 241.877 kb on + strand, within GFF1387 at 241.878 kb on - strand, within GFF1387
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 239,858 + GFF1385 0.73 -0.2 239,859 - GFF1385 0.73 +0.1 239,859 - GFF1385 0.73 -1.5 239,859 - GFF1385 0.73 -0.5 239,859 - GFF1385 0.73 -0.7 240,601 + GFF1386 0.49 +0.1 240,602 - GFF1386 0.49 -0.8 240,973 + GFF1386 0.86 +1.6 241,141 + +0.9 241,141 + -0.6 241,141 + +0.3 241,142 - -0.1 241,142 - -1.0 241,167 + +0.1 241,167 + +0.9 241,168 - +0.0 241,168 - -0.1 241,168 - +0.4 241,168 - +0.5 241,168 - -1.5 241,192 - +0.3 241,192 - -0.0 241,718 + GFF1387 0.38 +0.1 241,877 + GFF1387 0.50 -0.2 241,878 - GFF1387 0.51 +1.2
Or see this region's nucleotide sequence