Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1337

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1335 and GFF1336 are separated by 18 nucleotidesGFF1336 and GFF1337 overlap by 4 nucleotidesGFF1337 and GFF1338 are separated by 443 nucleotides GFF1335 - Type IV pilus biogenesis protein PilO, at 188,174 to 188,854 GFF1335 GFF1336 - Type IV pilus biogenesis protein PilN, at 188,873 to 189,490 GFF1336 GFF1337 - Type IV pilus biogenesis protein PilM, at 189,487 to 190,524 GFF1337 GFF1338 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 190,968 to 193,265 GFF1338 Position (kb) 189 190 191Strain fitness (log2 ratio) -2 -1 0 1 2 3at 188.550 kb on + strand, within GFF1335at 188.550 kb on + strand, within GFF1335at 188.550 kb on + strand, within GFF1335at 188.551 kb on - strand, within GFF1335at 188.551 kb on - strand, within GFF1335at 188.551 kb on - strand, within GFF1335at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.150 kb on + strand, within GFF1336at 189.151 kb on - strand, within GFF1336at 189.151 kb on - strand, within GFF1336at 189.151 kb on - strand, within GFF1336at 189.154 kb on + strand, within GFF1336at 189.155 kb on - strand, within GFF1336at 189.155 kb on - strand, within GFF1336at 189.363 kb on + strand, within GFF1336at 189.494 kb on + strandat 189.494 kb on + strandat 189.494 kb on + strandat 189.495 kb on - strandat 189.495 kb on - strandat 189.495 kb on - strandat 189.495 kb on - strandat 189.495 kb on - strandat 189.530 kb on + strandat 189.530 kb on + strandat 189.701 kb on + strand, within GFF1337at 189.701 kb on + strand, within GFF1337at 189.701 kb on + strand, within GFF1337at 189.701 kb on + strand, within GFF1337at 189.701 kb on + strand, within GFF1337at 189.701 kb on + strand, within GFF1337at 189.702 kb on - strand, within GFF1337at 189.702 kb on - strand, within GFF1337at 189.702 kb on - strand, within GFF1337at 189.788 kb on + strand, within GFF1337at 189.788 kb on + strand, within GFF1337at 189.789 kb on - strand, within GFF1337at 189.849 kb on - strand, within GFF1337at 189.905 kb on + strand, within GFF1337at 189.906 kb on - strand, within GFF1337at 189.906 kb on - strand, within GFF1337at 189.906 kb on - strand, within GFF1337at 190.037 kb on + strand, within GFF1337at 190.037 kb on + strand, within GFF1337at 190.037 kb on + strand, within GFF1337at 190.038 kb on - strand, within GFF1337at 190.038 kb on - strand, within GFF1337at 190.038 kb on - strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.214 kb on + strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.215 kb on - strand, within GFF1337at 190.546 kb on + strandat 190.609 kb on - strandat 190.633 kb on + strandat 190.633 kb on + strandat 190.634 kb on - strandat 190.695 kb on + strandat 190.695 kb on + strandat 190.696 kb on - strandat 190.696 kb on - strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.748 kb on - strandat 190.748 kb on - strandat 190.748 kb on - strandat 190.748 kb on - strandat 190.748 kb on - strandat 190.764 kb on + strandat 190.764 kb on + strandat 190.764 kb on + strandat 190.764 kb on + strandat 190.765 kb on - strandat 190.807 kb on - strandat 190.807 kb on - strandat 190.885 kb on + strandat 190.885 kb on + strandat 191.005 kb on - strandat 191.301 kb on + strand, within GFF1338at 191.302 kb on - strand, within GFF1338at 191.302 kb on - strand, within GFF1338at 191.322 kb on + strand, within GFF1338at 191.322 kb on + strand, within GFF1338at 191.322 kb on + strand, within GFF1338at 191.323 kb on - strand, within GFF1338at 191.323 kb on - strand, within GFF1338at 191.323 kb on - strand, within GFF1338at 191.337 kb on + strand, within GFF1338at 191.338 kb on - strand, within GFF1338at 191.338 kb on - strand, within GFF1338at 191.338 kb on - strand, within GFF1338at 191.400 kb on + strand, within GFF1338at 191.400 kb on + strand, within GFF1338at 191.400 kb on + strand, within GFF1338at 191.400 kb on + strand, within GFF1338at 191.401 kb on - strand, within GFF1338at 191.401 kb on - strand, within GFF1338at 191.401 kb on - strand, within GFF1338at 191.433 kb on + strand, within GFF1338at 191.434 kb on - strand, within GFF1338at 191.460 kb on + strand, within GFF1338

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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188,550 + GFF1335 0.55 +1.1
188,550 + GFF1335 0.55 +0.6
188,550 + GFF1335 0.55 +3.0
188,551 - GFF1335 0.55 +1.0
188,551 - GFF1335 0.55 +0.5
188,551 - GFF1335 0.55 +0.3
189,150 + GFF1336 0.45 +1.2
189,150 + GFF1336 0.45 +0.4
189,150 + GFF1336 0.45 +0.6
189,150 + GFF1336 0.45 +0.6
189,150 + GFF1336 0.45 -0.9
189,150 + GFF1336 0.45 +1.3
189,150 + GFF1336 0.45 +1.1
189,150 + GFF1336 0.45 +0.6
189,151 - GFF1336 0.45 +0.5
189,151 - GFF1336 0.45 +0.9
189,151 - GFF1336 0.45 -0.0
189,154 + GFF1336 0.45 +0.8
189,155 - GFF1336 0.46 +0.5
189,155 - GFF1336 0.46 +1.9
189,363 + GFF1336 0.79 +0.8
189,494 + -0.0
189,494 + +0.7
189,494 + +0.7
189,495 - +1.0
189,495 - +0.6
189,495 - +0.1
189,495 - +0.2
189,495 - +0.2
189,530 + +0.5
189,530 + +0.5
189,701 + GFF1337 0.21 +0.3
189,701 + GFF1337 0.21 +0.7
189,701 + GFF1337 0.21 +0.8
189,701 + GFF1337 0.21 +0.1
189,701 + GFF1337 0.21 +0.7
189,701 + GFF1337 0.21 +0.4
189,702 - GFF1337 0.21 -1.5
189,702 - GFF1337 0.21 +0.9
189,702 - GFF1337 0.21 +0.8
189,788 + GFF1337 0.29 +0.6
189,788 + GFF1337 0.29 -0.0
189,789 - GFF1337 0.29 +1.1
189,849 - GFF1337 0.35 +0.3
189,905 + GFF1337 0.40 -0.0
189,906 - GFF1337 0.40 +1.2
189,906 - GFF1337 0.40 +0.7
189,906 - GFF1337 0.40 -0.1
190,037 + GFF1337 0.53 -0.6
190,037 + GFF1337 0.53 -0.5
190,037 + GFF1337 0.53 +0.1
190,038 - GFF1337 0.53 -0.0
190,038 - GFF1337 0.53 -0.6
190,038 - GFF1337 0.53 +0.7
190,214 + GFF1337 0.70 +1.6
190,214 + GFF1337 0.70 +1.2
190,214 + GFF1337 0.70 +0.8
190,214 + GFF1337 0.70 +0.7
190,214 + GFF1337 0.70 +0.6
190,214 + GFF1337 0.70 +0.4
190,214 + GFF1337 0.70 -0.2
190,214 + GFF1337 0.70 -0.3
190,214 + GFF1337 0.70 -1.0
190,215 - GFF1337 0.70 +0.3
190,215 - GFF1337 0.70 +0.4
190,215 - GFF1337 0.70 +0.3
190,215 - GFF1337 0.70 -1.1
190,215 - GFF1337 0.70 +0.5
190,215 - GFF1337 0.70 +0.6
190,215 - GFF1337 0.70 +1.0
190,215 - GFF1337 0.70 -0.4
190,215 - GFF1337 0.70 +0.8
190,215 - GFF1337 0.70 +0.6
190,215 - GFF1337 0.70 +0.6
190,215 - GFF1337 0.70 +1.8
190,546 + +0.9
190,609 - +1.7
190,633 + +0.3
190,633 + +2.9
190,634 - +0.4
190,695 + +0.0
190,695 + +0.3
190,696 - +0.1
190,696 - -0.1
190,747 + +0.6
190,747 + +0.6
190,747 + +0.6
190,747 + +0.7
190,747 + -0.2
190,747 + -0.1
190,747 + +0.2
190,747 + +1.7
190,748 - +1.1
190,748 - -0.0
190,748 - -0.4
190,748 - +0.2
190,748 - +0.3
190,764 + +1.6
190,764 + +1.0
190,764 + +1.0
190,764 + +1.0
190,765 - -0.1
190,807 - +0.4
190,807 - -0.1
190,885 + -0.6
190,885 + +1.4
191,005 - -0.6
191,301 + GFF1338 0.14 -0.4
191,302 - GFF1338 0.15 +0.4
191,302 - GFF1338 0.15 +1.4
191,322 + GFF1338 0.15 -0.1
191,322 + GFF1338 0.15 -1.1
191,322 + GFF1338 0.15 -0.3
191,323 - GFF1338 0.15 -0.2
191,323 - GFF1338 0.15 -0.1
191,323 - GFF1338 0.15 -0.6
191,337 + GFF1338 0.16 -0.9
191,338 - GFF1338 0.16 -0.6
191,338 - GFF1338 0.16 +0.1
191,338 - GFF1338 0.16 +0.8
191,400 + GFF1338 0.19 -1.8
191,400 + GFF1338 0.19 +0.7
191,400 + GFF1338 0.19 +0.7
191,400 + GFF1338 0.19 +0.3
191,401 - GFF1338 0.19 +0.2
191,401 - GFF1338 0.19 -0.1
191,401 - GFF1338 0.19 -2.0
191,433 + GFF1338 0.20 -0.4
191,434 - GFF1338 0.20 -0.9
191,460 + GFF1338 0.21 -0.6

Or see this region's nucleotide sequence