Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF131

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF130 and GFF131 overlap by 1 nucleotidesGFF131 and GFF132 overlap by 29 nucleotides GFF130 - TRAP transporter solute receptor, unknown substrate 3, at 145,689 to 146,750 GFF130 GFF131 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3, at 146,750 to 147,256 GFF131 GFF132 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 147,228 to 148,547 GFF132 Position (kb) 146 147 148Strain fitness (log2 ratio) -1 0 1at 146.841 kb on - strand, within GFF131at 146.930 kb on + strand, within GFF131at 147.122 kb on + strand, within GFF131at 147.423 kb on + strand, within GFF132at 147.423 kb on + strand, within GFF132at 147.654 kb on + strand, within GFF132at 147.739 kb on - strand, within GFF132at 147.816 kb on + strand, within GFF132at 147.816 kb on + strand, within GFF132at 148.122 kb on + strand, within GFF132at 148.123 kb on - strand, within GFF132at 148.134 kb on + strand, within GFF132at 148.204 kb on - strand, within GFF132at 148.234 kb on - strand, within GFF132

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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146,841 - GFF131 0.18 +0.5
146,930 + GFF131 0.36 +0.6
147,122 + GFF131 0.73 +0.0
147,423 + GFF132 0.15 -0.7
147,423 + GFF132 0.15 +1.0
147,654 + GFF132 0.32 +1.0
147,739 - GFF132 0.39 -0.0
147,816 + GFF132 0.45 -0.4
147,816 + GFF132 0.45 -0.4
148,122 + GFF132 0.68 +0.4
148,123 - GFF132 0.68 +0.1
148,134 + GFF132 0.69 -0.7
148,204 - GFF132 0.74 +0.9
148,234 - GFF132 0.76 +0.1

Or see this region's nucleotide sequence