Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1254

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1252 and GFF1253 overlap by 4 nucleotidesGFF1253 and GFF1254 are separated by 74 nucleotidesGFF1254 and GFF1255 are separated by 42 nucleotidesGFF1255 and GFF1256 are separated by 16 nucleotides GFF1252 - Ubiquinone biosynthesis monooxygenase UbiB, at 109,477 to 111,042 GFF1252 GFF1253 - Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes, at 111,039 to 111,662 GFF1253 GFF1254 - putative membrane protein, at 111,737 to 112,735 GFF1254 GFF1255 - Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-), at 112,778 to 113,509 GFF1255 GFF1256 - FIG028220: hypothetical protein co-occurring with HEAT repeat protein, at 113,526 to 113,939 GFF1256 Position (kb) 111 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 111.678 kb on - strandat 111.738 kb on + strandat 111.738 kb on + strandat 111.738 kb on + strandat 111.879 kb on + strand, within GFF1254at 111.879 kb on + strand, within GFF1254at 111.879 kb on + strand, within GFF1254at 111.879 kb on + strand, within GFF1254at 111.879 kb on + strand, within GFF1254at 111.879 kb on + strand, within GFF1254at 111.879 kb on + strand, within GFF1254at 111.880 kb on - strand, within GFF1254at 111.880 kb on - strand, within GFF1254at 111.880 kb on - strand, within GFF1254at 111.880 kb on - strand, within GFF1254at 111.880 kb on - strand, within GFF1254at 112.257 kb on + strand, within GFF1254at 112.257 kb on + strand, within GFF1254at 112.257 kb on + strand, within GFF1254at 112.257 kb on + strand, within GFF1254at 112.258 kb on - strand, within GFF1254at 112.258 kb on - strand, within GFF1254at 112.258 kb on - strand, within GFF1254at 112.258 kb on - strand, within GFF1254at 112.258 kb on - strand, within GFF1254at 112.258 kb on - strand, within GFF1254at 112.258 kb on - strand, within GFF1254at 112.258 kb on - strand, within GFF1254at 112.281 kb on + strand, within GFF1254at 112.282 kb on - strand, within GFF1254at 112.282 kb on - strand, within GFF1254at 112.314 kb on + strand, within GFF1254at 112.314 kb on + strand, within GFF1254at 112.314 kb on + strand, within GFF1254at 112.315 kb on - strand, within GFF1254at 112.315 kb on - strand, within GFF1254at 112.767 kb on + strandat 113.608 kb on + strand, within GFF1256at 113.609 kb on - strand, within GFF1256at 113.609 kb on - strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.647 kb on + strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.648 kb on - strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.653 kb on + strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.654 kb on - strand, within GFF1256at 113.710 kb on + strand, within GFF1256at 113.710 kb on + strand, within GFF1256at 113.710 kb on + strand, within GFF1256at 113.711 kb on - strand, within GFF1256at 113.711 kb on - strand, within GFF1256at 113.711 kb on - strand, within GFF1256

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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111,678 - +1.2
111,738 + -0.3
111,738 + -0.7
111,738 + -0.3
111,879 + GFF1254 0.14 -0.9
111,879 + GFF1254 0.14 +2.7
111,879 + GFF1254 0.14 -0.0
111,879 + GFF1254 0.14 +0.4
111,879 + GFF1254 0.14 -0.3
111,879 + GFF1254 0.14 -0.7
111,879 + GFF1254 0.14 +0.2
111,880 - GFF1254 0.14 +0.1
111,880 - GFF1254 0.14 -1.2
111,880 - GFF1254 0.14 -0.5
111,880 - GFF1254 0.14 -1.2
111,880 - GFF1254 0.14 -0.1
112,257 + GFF1254 0.52 -1.5
112,257 + GFF1254 0.52 +0.9
112,257 + GFF1254 0.52 -0.5
112,257 + GFF1254 0.52 -1.8
112,258 - GFF1254 0.52 -1.6
112,258 - GFF1254 0.52 -1.1
112,258 - GFF1254 0.52 -0.6
112,258 - GFF1254 0.52 -0.5
112,258 - GFF1254 0.52 +0.7
112,258 - GFF1254 0.52 -0.1
112,258 - GFF1254 0.52 -0.2
112,258 - GFF1254 0.52 +0.7
112,281 + GFF1254 0.54 -1.8
112,282 - GFF1254 0.55 -0.6
112,282 - GFF1254 0.55 +0.2
112,314 + GFF1254 0.58 -0.4
112,314 + GFF1254 0.58 -0.4
112,314 + GFF1254 0.58 -0.0
112,315 - GFF1254 0.58 -1.6
112,315 - GFF1254 0.58 +0.4
112,767 + -0.5
113,608 + GFF1256 0.20 -1.2
113,609 - GFF1256 0.20 -0.5
113,609 - GFF1256 0.20 +0.2
113,647 + GFF1256 0.29 -0.9
113,647 + GFF1256 0.29 +0.6
113,647 + GFF1256 0.29 -1.2
113,647 + GFF1256 0.29 +1.1
113,647 + GFF1256 0.29 -0.1
113,647 + GFF1256 0.29 -0.1
113,647 + GFF1256 0.29 -2.0
113,647 + GFF1256 0.29 +0.1
113,647 + GFF1256 0.29 -0.3
113,647 + GFF1256 0.29 -0.3
113,647 + GFF1256 0.29 +1.0
113,648 - GFF1256 0.29 +0.4
113,648 - GFF1256 0.29 -0.2
113,648 - GFF1256 0.29 -0.5
113,648 - GFF1256 0.29 -0.5
113,648 - GFF1256 0.29 -0.6
113,648 - GFF1256 0.29 -0.6
113,648 - GFF1256 0.29 +0.1
113,653 + GFF1256 0.31 +0.5
113,653 + GFF1256 0.31 -0.0
113,653 + GFF1256 0.31 -0.5
113,653 + GFF1256 0.31 -0.8
113,653 + GFF1256 0.31 -0.3
113,653 + GFF1256 0.31 -0.3
113,653 + GFF1256 0.31 -0.6
113,654 - GFF1256 0.31 +0.4
113,654 - GFF1256 0.31 +0.2
113,654 - GFF1256 0.31 -0.6
113,654 - GFF1256 0.31 +1.0
113,654 - GFF1256 0.31 +0.2
113,710 + GFF1256 0.44 -0.7
113,710 + GFF1256 0.44 -0.8
113,710 + GFF1256 0.44 -0.5
113,711 - GFF1256 0.45 +0.2
113,711 - GFF1256 0.45 +0.2
113,711 - GFF1256 0.45 +0.5

Or see this region's nucleotide sequence