Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1151 and GFF1152 overlap by 22 nucleotides GFF1152 and GFF1153 overlap by 4 nucleotides GFF1153 and GFF1154 are separated by 75 nucleotides GFF1154 and GFF1155 overlap by 4 nucleotides
GFF1151 - 2-Oxobutyrate oxidase, putative, at 7,508 to 8,473
GFF1151
GFF1152 - Transcriptional regulator, GntR family, at 8,452 to 9,174
GFF1152
GFF1153 - Transcriptional regulator, LysR family, at 9,171 to 10,127
GFF1153
GFF1154 - Enoyl-CoA hydratase (EC 4.2.1.17), at 10,203 to 11,114
GFF1154
GFF1155 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 11,111 to 13,276
GFF1155
Position (kb) 9
10
11 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 8.424 kb on - strand at 8.575 kb on + strand, within GFF1152 at 8.576 kb on - strand, within GFF1152 at 8.885 kb on - strand, within GFF1152 at 8.899 kb on + strand, within GFF1152 at 8.899 kb on + strand, within GFF1152 at 8.899 kb on + strand, within GFF1152 at 9.067 kb on + strand, within GFF1152 at 9.067 kb on + strand, within GFF1152 at 9.067 kb on + strand, within GFF1152 at 9.067 kb on + strand, within GFF1152 at 9.067 kb on + strand, within GFF1152 at 9.068 kb on - strand, within GFF1152 at 9.068 kb on - strand, within GFF1152 at 9.091 kb on + strand, within GFF1152 at 9.127 kb on + strand at 9.128 kb on - strand at 9.154 kb on + strand at 9.155 kb on - strand at 9.155 kb on - strand at 9.592 kb on + strand, within GFF1153 at 10.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 8,424 - -0.6 8,575 + GFF1152 0.17 -0.3 8,576 - GFF1152 0.17 -2.9 8,885 - GFF1152 0.60 +0.5 8,899 + GFF1152 0.62 -0.3 8,899 + GFF1152 0.62 -0.2 8,899 + GFF1152 0.62 +1.4 9,067 + GFF1152 0.85 +0.5 9,067 + GFF1152 0.85 -0.7 9,067 + GFF1152 0.85 +0.0 9,067 + GFF1152 0.85 -1.2 9,067 + GFF1152 0.85 -0.1 9,068 - GFF1152 0.85 -0.6 9,068 - GFF1152 0.85 -0.0 9,091 + GFF1152 0.88 +1.1 9,127 + -0.3 9,128 - -1.0 9,154 + +0.1 9,155 - +0.5 9,155 - +2.2 9,592 + GFF1153 0.44 +0.4 10,044 - +1.3
Or see this region's nucleotide sequence