Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1018

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1017 and GFF1018 are separated by 48 nucleotidesGFF1018 and GFF1019 are separated by 8 nucleotidesGFF1019 and GFF1020 are separated by 9 nucleotides GFF1017 - Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-), at 755,257 to 756,291 GFF1017 GFF1018 - Aldehyde dehydrogenase A (EC 1.2.1.22), at 756,340 to 757,806 GFF1018 GFF1019 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 757,815 to 758,597 GFF1019 GFF1020 - TRAP transporter solute receptor, unknown substrate 3, at 758,607 to 759,659 GFF1020 Position (kb) 756 757 758Strain fitness (log2 ratio) -2 -1 0 1at 755.342 kb on - strandat 755.489 kb on + strand, within GFF1017at 755.489 kb on + strand, within GFF1017at 755.490 kb on - strand, within GFF1017at 755.490 kb on - strand, within GFF1017at 755.600 kb on + strand, within GFF1017at 755.635 kb on + strand, within GFF1017at 755.727 kb on - strand, within GFF1017at 755.727 kb on - strand, within GFF1017at 755.816 kb on + strand, within GFF1017at 755.817 kb on - strand, within GFF1017at 755.880 kb on - strand, within GFF1017at 755.894 kb on + strand, within GFF1017at 755.895 kb on - strand, within GFF1017at 755.988 kb on - strand, within GFF1017at 756.006 kb on - strand, within GFF1017at 756.006 kb on - strand, within GFF1017at 756.090 kb on - strand, within GFF1017at 756.258 kb on + strandat 756.269 kb on + strandat 756.269 kb on + strandat 756.269 kb on + strandat 756.269 kb on + strandat 756.270 kb on - strandat 756.270 kb on - strandat 756.270 kb on - strandat 756.270 kb on - strandat 756.270 kb on - strandat 756.295 kb on + strandat 756.306 kb on + strandat 756.308 kb on + strandat 756.309 kb on - strandat 756.309 kb on - strandat 756.313 kb on - strandat 756.313 kb on - strandat 756.316 kb on - strandat 756.367 kb on + strandat 756.367 kb on + strandat 756.368 kb on - strandat 756.368 kb on - strandat 756.378 kb on - strandat 756.378 kb on - strandat 756.855 kb on + strand, within GFF1018at 756.856 kb on - strand, within GFF1018at 757.299 kb on + strand, within GFF1018at 757.335 kb on + strand, within GFF1018at 757.444 kb on + strand, within GFF1018at 757.445 kb on - strand, within GFF1018at 757.445 kb on - strand, within GFF1018at 757.466 kb on + strand, within GFF1018at 757.466 kb on + strand, within GFF1018at 757.470 kb on - strand, within GFF1018at 757.540 kb on + strand, within GFF1018at 757.541 kb on - strand, within GFF1018at 757.806 kb on + strandat 757.806 kb on + strandat 757.806 kb on + strandat 757.806 kb on + strandat 757.807 kb on - strandat 757.888 kb on + strandat 757.888 kb on + strandat 757.889 kb on - strandat 757.889 kb on - strandat 757.889 kb on - strandat 757.918 kb on - strand, within GFF1019at 758.027 kb on + strand, within GFF1019at 758.027 kb on + strand, within GFF1019at 758.028 kb on - strand, within GFF1019at 758.028 kb on - strand, within GFF1019at 758.028 kb on - strand, within GFF1019at 758.028 kb on - strand, within GFF1019at 758.028 kb on - strand, within GFF1019at 758.039 kb on + strand, within GFF1019at 758.107 kb on + strand, within GFF1019at 758.107 kb on + strand, within GFF1019at 758.107 kb on + strand, within GFF1019at 758.108 kb on - strand, within GFF1019at 758.108 kb on - strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.509 kb on + strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.510 kb on - strand, within GFF1019at 758.608 kb on + strandat 758.608 kb on + strandat 758.618 kb on + strandat 758.715 kb on + strand, within GFF1020at 758.715 kb on + strand, within GFF1020at 758.716 kb on - strand, within GFF1020at 758.716 kb on - strand, within GFF1020at 758.765 kb on + strand, within GFF1020

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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755,342 - +0.1
755,489 + GFF1017 0.22 +0.1
755,489 + GFF1017 0.22 -0.3
755,490 - GFF1017 0.23 -0.3
755,490 - GFF1017 0.23 -0.2
755,600 + GFF1017 0.33 -0.2
755,635 + GFF1017 0.37 +0.8
755,727 - GFF1017 0.45 -0.5
755,727 - GFF1017 0.45 -0.3
755,816 + GFF1017 0.54 -1.2
755,817 - GFF1017 0.54 +0.3
755,880 - GFF1017 0.60 -0.4
755,894 + GFF1017 0.62 +0.1
755,895 - GFF1017 0.62 -0.9
755,988 - GFF1017 0.71 -1.3
756,006 - GFF1017 0.72 -0.5
756,006 - GFF1017 0.72 +0.1
756,090 - GFF1017 0.80 +0.0
756,258 + -1.3
756,269 + +0.3
756,269 + -0.5
756,269 + -0.1
756,269 + -0.3
756,270 - -1.9
756,270 - +0.2
756,270 - +0.0
756,270 - -0.1
756,270 - -0.2
756,295 + -0.6
756,306 + +0.3
756,308 + +0.0
756,309 - -0.1
756,309 - +0.2
756,313 - -0.5
756,313 - +0.3
756,316 - -0.4
756,367 + -0.0
756,367 + +0.0
756,368 - -0.4
756,368 - -0.4
756,378 - -0.5
756,378 - -0.2
756,855 + GFF1018 0.35 -0.0
756,856 - GFF1018 0.35 +0.7
757,299 + GFF1018 0.65 +1.4
757,335 + GFF1018 0.68 +0.7
757,444 + GFF1018 0.75 +0.6
757,445 - GFF1018 0.75 +0.1
757,445 - GFF1018 0.75 +0.1
757,466 + GFF1018 0.77 +0.3
757,466 + GFF1018 0.77 +0.1
757,470 - GFF1018 0.77 -0.2
757,540 + GFF1018 0.82 -1.0
757,541 - GFF1018 0.82 +0.4
757,806 + -0.5
757,806 + +0.6
757,806 + +0.5
757,806 + -0.2
757,807 - -0.2
757,888 + +0.2
757,888 + +0.8
757,889 - +0.0
757,889 - -0.0
757,889 - -0.4
757,918 - GFF1019 0.13 +0.9
758,027 + GFF1019 0.27 -0.2
758,027 + GFF1019 0.27 +0.5
758,028 - GFF1019 0.27 -1.1
758,028 - GFF1019 0.27 +0.0
758,028 - GFF1019 0.27 -0.1
758,028 - GFF1019 0.27 -0.1
758,028 - GFF1019 0.27 -0.1
758,039 + GFF1019 0.29 +0.6
758,107 + GFF1019 0.37 +0.8
758,107 + GFF1019 0.37 +0.5
758,107 + GFF1019 0.37 +0.0
758,108 - GFF1019 0.37 +0.8
758,108 - GFF1019 0.37 -0.3
758,509 + GFF1019 0.89 -0.0
758,509 + GFF1019 0.89 +0.6
758,509 + GFF1019 0.89 +0.4
758,509 + GFF1019 0.89 -0.2
758,509 + GFF1019 0.89 -0.5
758,509 + GFF1019 0.89 -0.1
758,509 + GFF1019 0.89 -0.4
758,509 + GFF1019 0.89 -0.5
758,510 - GFF1019 0.89 -0.1
758,510 - GFF1019 0.89 +0.6
758,510 - GFF1019 0.89 +0.3
758,510 - GFF1019 0.89 +0.6
758,510 - GFF1019 0.89 -1.4
758,510 - GFF1019 0.89 +0.0
758,510 - GFF1019 0.89 +1.0
758,510 - GFF1019 0.89 -0.1
758,510 - GFF1019 0.89 +0.0
758,510 - GFF1019 0.89 -0.5
758,510 - GFF1019 0.89 +0.7
758,608 + +0.8
758,608 + +0.2
758,618 + +0.0
758,715 + GFF1020 0.10 +0.8
758,715 + GFF1020 0.10 +0.0
758,716 - GFF1020 0.10 -0.9
758,716 - GFF1020 0.10 +0.7
758,765 + GFF1020 0.15 +0.2

Or see this region's nucleotide sequence