Strain Fitness in Escherichia fergusonii Becca around EFB2_04296

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
4,517,324	-		EFB2_04295	0.65	-0.8
4,517,464	+		EFB2_04295	0.71	+0.0
4,517,493	+		EFB2_04295	0.72	+1.3
4,517,493	+		EFB2_04295	0.72	-0.5
4,517,494	-		EFB2_04295	0.73	-0.7
4,517,566	+		EFB2_04295	0.76	-0.5
4,517,660	-		EFB2_04295	0.80	+0.3
4,517,660	-		EFB2_04295	0.80	-0.2
4,517,660	-		EFB2_04295	0.80	-0.5
4,517,765	-		EFB2_04295	0.85	-0.5
4,517,821	+		EFB2_04295	0.88	+0.8
4,517,822	-		EFB2_04295	0.88	+0.0
4,517,827	+		EFB2_04295	0.88	+0.3
4,517,828	-		EFB2_04295	0.88	-0.5
4,517,837	+		EFB2_04295	0.89	-0.5
4,517,837	+		EFB2_04295	0.89	+2.3
4,517,837	+		EFB2_04295	0.89	-0.5
4,517,838	-		EFB2_04295	0.89	-0.7
4,517,838	-		EFB2_04295	0.89	+1.3
4,517,842	+		EFB2_04295	0.89	+2.3
4,517,842	+		EFB2_04295	0.89	-0.7
4,517,843	-		EFB2_04295	0.89	-1.0
4,517,875	+				+1.3
4,517,875	+				-0.5
4,517,990	+				+0.3
4,517,990	+				+0.0
4,517,990	+				-0.8
4,517,991	-				-0.2
4,517,991	-				-0.5
4,518,051	+				+2.3
4,518,074	+				-0.0
4,518,074	+				+0.4
4,518,074	+				-0.1
4,518,074	+				+1.9
4,518,074	+				-2.4
4,518,074	+				-1.0
4,518,074	+				+0.9
4,518,074	+				+1.3
4,518,074	+				-1.0
4,518,074	+				+0.2
4,518,074	+				+1.4
4,518,074	+				-0.8
4,518,074	+				-1.4
4,518,075	-				-0.5
4,518,075	-				+1.3
4,518,075	-				-1.9
4,518,075	-				+0.0
4,518,075	-				+0.0
4,518,075	-				+0.3
4,518,075	-				-1.0
4,518,075	-				+0.3
4,518,079	+				+1.8
4,518,096	+				+0.6
4,518,096	+				+1.3
4,518,097	-				-1.9
4,518,097	-				+0.0
4,518,136	+				+1.2
4,518,136	+				-0.8
4,518,155	-				-1.4
4,518,209	+				+0.7
4,518,209	+				-2.5
4,518,209	+				-0.7
4,518,209	+				+1.1
4,518,210	-				-1.0
4,518,210	-				-1.1
4,518,237	+				+0.2
4,518,237	+				-1.1
4,518,237	+				+0.1
4,518,238	-				-0.5
4,518,245	+				-0.5
4,518,246	-				-0.5
4,518,254	+				-0.7
4,518,255	-				+0.8
4,518,255	-				-1.1
4,518,258	-				+0.8
4,518,258	-				+0.0
4,518,258	-				-0.7
4,518,338	+		EFB2_04296	0.21	+2.3
4,518,338	+		EFB2_04296	0.21	+0.8
4,518,339	-		EFB2_04296	0.22	+0.0
4,518,339	-		EFB2_04296	0.22	+0.8
4,518,379	+		EFB2_04296	0.30	+0.3
4,518,504	+		EFB2_04296	0.57	-1.2
4,518,504	+		EFB2_04296	0.57	+1.3
4,518,505	-		EFB2_04296	0.57	-0.2
4,518,505	-		EFB2_04296	0.57	-0.7
4,518,505	-		EFB2_04296	0.57	-0.5
4,518,557	+		EFB2_04296	0.68	-1.0
4,518,608	-		EFB2_04296	0.79	-0.2
4,518,704	+				+0.6
4,518,704	+				+0.9
4,518,704	+				+0.6
4,518,704	+				+1.1
4,518,704	+				+0.2
4,518,704	+				-0.0
4,518,704	+				+0.4
4,518,704	+				-1.0
4,518,704	+				+0.3
4,518,704	+				-1.8
4,518,705	-				+1.2
4,518,705	-				+0.1
4,518,705	-				-1.8
4,518,716	+				+0.0
4,518,716	+				+0.1
4,518,741	+				+1.5
4,518,741	+				+1.1
4,518,741	+				-0.4
4,518,742	-				-1.0
4,518,742	-				-2.1
4,518,750	-				+0.2
4,518,755	+				+0.6
4,518,755	+				+1.0
4,518,755	+				+0.9
4,518,755	+				-0.3
4,518,755	+				+0.6
4,518,756	-				+0.8
4,518,756	-				+0.0
4,518,756	-				-0.1
4,518,756	-				-0.1
4,518,756	-				+1.1
4,518,756	-				+0.7
4,518,756	-				-0.7
4,518,767	+				+1.0
4,518,767	+				+0.8
4,518,767	+				+0.5
4,518,767	+				+1.9
4,518,817	+		EFB2_04297	0.18	-0.3
4,518,817	+		EFB2_04297	0.18	-0.2
4,518,817	+		EFB2_04297	0.18	-0.5
4,518,818	-		EFB2_04297	0.18	+1.2
4,518,818	-		EFB2_04297	0.18	-0.3
4,518,822	+		EFB2_04297	0.19	-0.8
4,518,822	+		EFB2_04297	0.19	-0.5
4,518,822	+		EFB2_04297	0.19	-0.6
4,518,822	+		EFB2_04297	0.19	-2.0
4,518,822	+		EFB2_04297	0.19	-0.2
4,518,823	-		EFB2_04297	0.19	+0.6
4,518,823	-		EFB2_04297	0.19	+0.2
4,519,027	+		EFB2_04297	0.72	-0.7
4,519,027	+		EFB2_04297	0.72	+2.3
4,519,027	+		EFB2_04297	0.72	-1.1
4,519,028	-		EFB2_04297	0.72	+0.3
4,519,050	+		EFB2_04297	0.78	+0.5
4,519,051	-		EFB2_04297	0.78	+0.4
4,519,090	+		EFB2_04297	0.88	-0.1
4,519,090	+		EFB2_04297	0.88	-1.1
4,519,113	+				+0.3
4,519,113	+				+1.3
4,519,113	+				-0.7
4,519,113	+				-0.6
4,519,113	+				-1.4
4,519,113	+				+1.8
4,519,114	-				+1.5
4,519,114	-				+0.5
4,519,114	-				-2.0
4,519,114	-				+0.1
4,519,114	-				+0.3
4,519,114	-				+0.5
4,519,114	-				-0.3
4,519,117	+				-1.3
4,519,117	+				-0.0
4,519,117	+				-0.9
4,519,117	+				-0.1
4,519,117	+				+0.4
4,519,117	+				+0.1
4,519,117	+				+0.2
4,519,117	+				-3.1
4,519,117	+				+0.7
4,519,117	+				+1.3
4,519,117	+				-1.0
4,519,117	+				-0.8
4,519,117	+				+1.0
4,519,117	+				-0.1
4,519,118	-				+0.4
4,519,118	-				+0.5
4,519,118	-				-0.2
4,519,118	-				-0.1
4,519,118	-				+0.2
4,519,118	-				+1.0
4,519,118	-				-0.3
4,519,118	-				+3.2
4,519,118	-				-0.0
4,519,118	-				-0.2
4,519,128	+				+1.3
4,519,128	+				-0.2
4,519,128	+				-0.5
4,519,128	+				-0.2
4,519,128	+				+0.4
4,519,129	-				+0.2
4,519,129	-				-1.0
4,519,129	-				-0.2
4,519,129	-				-1.8
4,519,151	+				-1.0
4,519,152	-				+1.1
4,519,152	-				-0.1
4,519,154	+				+0.9
4,519,154	+				-0.3
4,519,154	+				+0.5
4,519,154	+				-1.2
4,519,155	-				+1.8
4,519,237	+				-0.7
4,519,237	+				+0.1
4,519,237	+				-0.5
4,519,237	+				-0.4
4,519,237	+				+0.9
4,519,237	+				+0.0
4,519,237	+				+0.4
4,519,237	+				-1.0
4,519,237	+				-0.7
4,519,237	+				+0.4
4,519,237	+				+2.0
4,519,237	+				-0.7
4,519,237	+				+0.5
4,519,237	+				-1.6
4,519,237	+				-1.4
4,519,237	+				+1.3
4,519,237	+				+1.3
4,519,237	+				-0.7
4,519,237	+				-2.3
4,519,237	+				+0.6
4,519,237	+				+0.8
4,519,237	+				-0.9
4,519,237	+				-1.0
4,519,237	+				+0.6
4,519,237	+				-1.4
4,519,237	+				-0.1
4,519,237	+				+0.4
4,519,237	+				-1.4
4,519,237	+				+0.0
4,519,237	+				-0.2
4,519,237	+				+0.2
4,519,237	+				-0.0
4,519,237	+				+0.9
4,519,237	+				+1.3
4,519,237	+				-0.3
4,519,237	+				-1.1
4,519,237	+				+1.3
4,519,237	+				-0.6
4,519,237	+				-1.7
4,519,237	+				-2.0
4,519,237	+				+1.0
4,519,237	+				-0.5
4,519,237	+				+0.4
4,519,237	+				+0.1
4,519,237	+				-0.4
4,519,237	+				+0.1
4,519,237	+				-2.9
4,519,237	+				+1.0
4,519,237	+				-2.8
4,519,237	+				-2.2
4,519,237	+				+1.0
4,519,237	+				+0.7
4,519,237	+				-0.8
4,519,237	+				+1.9
4,519,237	+				-0.4
4,519,238	-				+0.5
4,519,238	-				+0.0
4,519,238	-				-0.4
4,519,238	-				-0.7
4,519,238	-				+0.1
4,519,238	-				+0.7
4,519,238	-				-1.4
4,519,238	-				-0.0
4,519,238	-				-1.0
4,519,238	-				+0.9
4,519,238	-				+0.4
4,519,238	-				+0.5
4,519,238	-				+2.2
4,519,238	-				-0.7
4,519,238	-				-1.1
4,519,238	-				-0.3
4,519,238	-				+2.9
4,519,238	-				+0.6
4,519,238	-				-0.9
4,519,238	-				+0.3
4,519,238	-				-0.0
4,519,238	-				+1.6
4,519,238	-				+1.3
4,519,238	-				-0.2
4,519,238	-				-0.5
4,519,238	-				-0.8
4,519,238	-				-0.2
4,519,238	-				-1.2
4,519,238	-				-1.7
4,519,238	-				-1.0
4,519,238	-				+0.2
4,519,238	-				-1.4
4,519,238	-				-1.6
4,519,238	-				+1.1
4,519,238	-				+0.2
4,519,238	-				-0.3
4,519,238	-				-0.3
4,519,238	-				+0.1
4,519,238	-				-0.1
4,519,238	-				+0.3
4,519,238	-				-0.2
4,519,238	-				-0.5
4,519,238	-				+0.2
4,519,238	-				+0.2
4,519,238	-				+1.1
4,519,238	-				+0.9
4,519,238	-				+1.5
4,519,238	-				+0.0
4,519,238	-				-2.0
4,519,238	-				-0.5
4,519,238	-				+1.4
4,519,238	-				-1.8
4,519,239	+				-0.4
4,519,239	+				+0.5
4,519,239	+				-0.8
4,519,239	+				-0.0
4,519,239	+				-0.9
4,519,239	+				-0.4
4,519,239	+				+0.7
4,519,239	+				+0.5
4,519,239	+				-1.1
4,519,239	+				+1.3
4,519,239	+				-0.2
4,519,239	+				-1.2
4,519,239	+				+1.6
4,519,240	-				+3.1
4,519,240	-				+0.6
4,519,240	-				-2.4
4,519,240	-				+0.3
4,519,240	-				-0.5
4,519,240	-				+0.1
4,519,240	-				-2.4
4,519,240	-				+0.4
4,519,240	-				-0.5
4,519,240	-				-4.4
4,519,240	-				-1.8
4,519,240	-				+0.0
4,519,240	-				+1.0
4,519,240	-				+0.1
4,519,240	-				-2.8
4,519,242	+				-2.0
4,519,242	+				+0.2
4,519,242	+				-0.4
4,519,243	-				-0.5
4,519,243	-				+1.3
4,519,243	-				+0.2
4,519,243	-				+1.1
4,519,243	-				+1.3
4,519,243	-				+0.3
4,519,243	-				-0.1
4,519,257	+				+0.5
4,519,278	+				+1.4
4,519,278	+				-0.2
4,519,279	-				-0.4
4,519,279	-				-0.5
4,519,290	+				+1.1
4,519,290	+				+0.4
4,519,290	+				-3.9
4,519,290	+				+0.1
4,519,290	+				-0.6
4,519,290	+				+1.2
4,519,290	+				-1.2
4,519,290	+				-1.1
4,519,290	+				+1.7
4,519,290	+				+0.6
4,519,290	+				+0.6
4,519,290	+				-0.6
4,519,290	+				+0.5
4,519,291	-				-0.2
4,519,291	-				+0.8
4,519,291	-				-2.4
4,519,291	-				-1.0
4,519,291	-				+0.4
4,519,291	-				-1.5
4,519,291	-				+0.3
4,519,291	-				+0.2
4,519,291	-				-1.4
4,519,291	-				+1.1
4,519,291	-				+1.2
4,519,291	-				+0.7
4,519,291	-				-0.5
4,519,291	-				-0.2
4,519,291	-				+0.9
4,519,291	-				+0.2
4,519,291	-				-2.5
4,519,297	+				-1.0
4,519,297	+				-1.7
4,519,298	-				+0.1
4,519,298	-				+0.7
4,519,302	+				+3.0
4,519,302	+				-3.2
4,519,303	-				-0.1
4,519,303	-				+0.1
4,519,303	-				+0.8
4,519,303	-				+1.5
4,519,303	-				+0.8
4,519,379	+		EFB2_04298	0.14	-0.5
4,519,379	+		EFB2_04298	0.14	-0.9
4,519,380	-		EFB2_04298	0.14	-0.5
4,519,380	-		EFB2_04298	0.14	-1.5
4,519,380	-		EFB2_04298	0.14	-0.2
4,519,380	-		EFB2_04298	0.14	-1.9
4,519,380	-		EFB2_04298	0.14	+3.9
4,519,380	-		EFB2_04298	0.14	-0.5
4,519,468	+		EFB2_04298	0.21	+0.3
4,519,468	+		EFB2_04298	0.21	-1.0
4,519,469	-		EFB2_04298	0.21	+0.5
4,519,469	-		EFB2_04298	0.21	+0.2
4,519,469	-		EFB2_04298	0.21	-0.9
4,519,469	-		EFB2_04298	0.21	+0.1
4,519,547	+		EFB2_04298	0.26	-0.3
4,519,547	+		EFB2_04298	0.26	+0.1
4,519,547	+		EFB2_04298	0.26	-1.6
4,519,547	+		EFB2_04298	0.26	-0.7
4,519,547	+		EFB2_04298	0.26	-0.4
4,519,547	+		EFB2_04298	0.26	-0.5
4,519,548	-		EFB2_04298	0.27	+0.3
4,519,548	-		EFB2_04298	0.27	-2.5
4,519,548	-		EFB2_04298	0.27	-1.9
4,519,548	-		EFB2_04298	0.27	+1.0
4,519,548	-		EFB2_04298	0.27	-0.2
4,519,632	+		EFB2_04298	0.33	-0.0
4,519,632	+		EFB2_04298	0.33	+0.9
4,519,632	+		EFB2_04298	0.33	-0.5
4,519,632	+		EFB2_04298	0.33	-0.5
4,519,632	+		EFB2_04298	0.33	+0.3
4,519,632	+		EFB2_04298	0.33	-0.4
4,519,632	+		EFB2_04298	0.33	-0.1
4,519,632	+		EFB2_04298	0.33	-3.2
4,519,632	+		EFB2_04298	0.33	+0.7
4,519,632	+		EFB2_04298	0.33	-0.3
4,519,633	-		EFB2_04298	0.33	-1.2
4,519,633	-		EFB2_04298	0.33	-2.7
4,519,633	-		EFB2_04298	0.33	+0.0
4,519,633	-		EFB2_04298	0.33	-0.1
4,519,633	-		EFB2_04298	0.33	-1.2
4,519,633	-		EFB2_04298	0.33	-0.4
4,519,633	-		EFB2_04298	0.33	+1.5
4,519,633	-		EFB2_04298	0.33	+0.4
4,519,633	-		EFB2_04298	0.33	-0.2
4,519,633	-		EFB2_04298	0.33	+1.3
4,519,633	-		EFB2_04298	0.33	-1.8
4,519,633	-		EFB2_04298	0.33	-1.1