Strain Fitness in Escherichia fergusonii Becca around EFB2_04290

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
4,506,703	+		EFB2_04288	0.53	-0.5
4,506,704	-		EFB2_04288	0.53	+1.2
4,506,704	-		EFB2_04288	0.53	-1.1
4,506,763	+		EFB2_04288	0.59	+0.4
4,506,764	-		EFB2_04288	0.59	+0.0
4,506,799	+		EFB2_04288	0.63	-1.4
4,506,799	+		EFB2_04288	0.63	+1.9
4,506,799	+		EFB2_04288	0.63	+0.5
4,506,799	+		EFB2_04288	0.63	+1.3
4,506,799	+		EFB2_04288	0.63	-0.0
4,506,799	+		EFB2_04288	0.63	-0.2
4,506,800	-		EFB2_04288	0.63	+2.3
4,506,800	-		EFB2_04288	0.63	-0.2
4,506,800	-		EFB2_04288	0.63	-2.0
4,506,800	-		EFB2_04288	0.63	-0.2
4,506,852	+		EFB2_04288	0.69	+0.3
4,506,853	-		EFB2_04288	0.69	-2.7
4,506,876	-		EFB2_04288	0.71	-0.6
4,506,876	-		EFB2_04288	0.71	-1.6
4,506,876	-		EFB2_04288	0.71	-1.7
4,506,886	+		EFB2_04288	0.72	+0.0
4,506,886	+		EFB2_04288	0.72	+0.8
4,506,886	+		EFB2_04288	0.72	-0.2
4,506,886	+		EFB2_04288	0.72	+1.5
4,506,886	+		EFB2_04288	0.72	-2.7
4,506,886	+		EFB2_04288	0.72	-1.1
4,506,886	+		EFB2_04288	0.72	-0.1
4,506,886	+		EFB2_04288	0.72	+1.6
4,506,886	+		EFB2_04288	0.72	+0.4
4,506,886	+		EFB2_04288	0.72	-0.7
4,506,887	-		EFB2_04288	0.73	+0.5
4,506,887	-		EFB2_04288	0.73	-1.4
4,506,887	-		EFB2_04288	0.73	+0.8
4,506,990	+		EFB2_04288	0.84	+1.8
4,507,044	+		EFB2_04288	0.89	-0.7
4,507,063	+				+0.8
4,507,063	+				+0.9
4,507,064	-				-0.7
4,507,136	+				-0.1
4,507,137	-				-2.0
4,507,137	-				-2.8
4,507,137	-				+0.6
4,507,141	+				-2.1
4,507,141	+				-0.4
4,507,141	+				+0.6
4,507,142	-				+0.1
4,507,142	-				+1.4
4,507,142	-				+0.8
4,507,151	+				+0.1
4,507,151	+				+0.4
4,507,151	+				-0.8
4,507,151	+				-0.8
4,507,151	+				-0.1
4,507,151	+				+2.0
4,507,151	+				-2.0
4,507,151	+				-0.0
4,507,152	-				-0.2
4,507,152	-				+1.3
4,507,152	-				-0.6
4,507,170	+				-0.3
4,507,170	+				+0.5
4,507,170	+				-0.6
4,507,170	+				-0.3
4,507,171	-				+0.4
4,507,171	-				-0.0
4,507,171	-				+0.2
4,507,171	-				-1.7
4,507,188	+				-1.1
4,507,189	-				-1.7
4,507,191	+				+0.9
4,507,191	+				-2.3
4,507,191	+				-0.6
4,507,192	-				+0.8
4,507,205	+		EFB2_04289	0.11	-0.3
4,507,205	+		EFB2_04289	0.11	-2.6
4,507,206	-		EFB2_04289	0.11	+0.1
4,507,206	-		EFB2_04289	0.11	-2.4
4,507,206	-		EFB2_04289	0.11	-1.3
4,507,206	-		EFB2_04289	0.11	-0.7
4,507,206	-		EFB2_04289	0.11	-0.0
4,507,206	-		EFB2_04289	0.11	-1.6
4,507,215	+		EFB2_04289	0.13	+0.9
4,507,216	-		EFB2_04289	0.13	+2.5
4,507,216	-		EFB2_04289	0.13	-0.3
4,507,236	+		EFB2_04289	0.17	+0.8
4,507,236	+		EFB2_04289	0.17	-0.3
4,507,344	+		EFB2_04289	0.41	-2.2
4,507,345	-		EFB2_04289	0.41	-0.1
4,507,367	+		EFB2_04289	0.46	+0.5
4,507,384	+		EFB2_04289	0.49	-3.6
4,507,384	+		EFB2_04289	0.49	-3.3
4,507,384	+		EFB2_04289	0.49	-0.8
4,507,384	+		EFB2_04289	0.49	-0.9
4,507,384	+		EFB2_04289	0.49	-0.4
4,507,384	+		EFB2_04289	0.49	-0.6
4,507,384	+		EFB2_04289	0.49	-0.4
4,507,384	+		EFB2_04289	0.49	+2.3
4,507,384	+		EFB2_04289	0.49	+0.6
4,507,384	+		EFB2_04289	0.49	+0.5
4,507,384	+		EFB2_04289	0.49	+0.1
4,507,384	+		EFB2_04289	0.49	+1.6
4,507,384	+		EFB2_04289	0.49	+0.3
4,507,384	+		EFB2_04289	0.49	+0.2
4,507,384	+		EFB2_04289	0.49	-1.0
4,507,384	+		EFB2_04289	0.49	-0.6
4,507,384	+		EFB2_04289	0.49	-2.5
4,507,384	+		EFB2_04289	0.49	+1.3
4,507,384	+		EFB2_04289	0.49	+0.8
4,507,384	+		EFB2_04289	0.49	-0.1
4,507,384	+		EFB2_04289	0.49	-0.7
4,507,384	+		EFB2_04289	0.49	-1.4
4,507,384	+		EFB2_04289	0.49	-0.6
4,507,384	+		EFB2_04289	0.49	+0.7
4,507,384	+		EFB2_04289	0.49	-1.4
4,507,384	+		EFB2_04289	0.49	+0.1
4,507,384	+		EFB2_04289	0.49	-0.1
4,507,384	+		EFB2_04289	0.49	+1.3
4,507,384	+		EFB2_04289	0.49	+0.6
4,507,384	+		EFB2_04289	0.49	-1.0
4,507,384	+		EFB2_04289	0.49	+0.3
4,507,384	+		EFB2_04289	0.49	-1.0
4,507,384	+		EFB2_04289	0.49	+0.8
4,507,384	+		EFB2_04289	0.49	-1.7
4,507,384	+		EFB2_04289	0.49	+0.1
4,507,384	+		EFB2_04289	0.49	+0.7
4,507,384	+		EFB2_04289	0.49	+0.4
4,507,385	-		EFB2_04289	0.50	+0.2
4,507,385	-		EFB2_04289	0.50	-1.0
4,507,385	-		EFB2_04289	0.50	+1.1
4,507,385	-		EFB2_04289	0.50	+0.6
4,507,385	-		EFB2_04289	0.50	+0.0
4,507,385	-		EFB2_04289	0.50	+0.2
4,507,385	-		EFB2_04289	0.50	-0.6
4,507,385	-		EFB2_04289	0.50	-0.4
4,507,385	-		EFB2_04289	0.50	+0.9
4,507,385	-		EFB2_04289	0.50	-0.2
4,507,385	-		EFB2_04289	0.50	-2.4
4,507,385	-		EFB2_04289	0.50	-1.4
4,507,385	-		EFB2_04289	0.50	-0.1
4,507,385	-		EFB2_04289	0.50	+0.5
4,507,385	-		EFB2_04289	0.50	-0.6
4,507,385	-		EFB2_04289	0.50	+0.8
4,507,385	-		EFB2_04289	0.50	-0.3
4,507,385	-		EFB2_04289	0.50	-0.7
4,507,385	-		EFB2_04289	0.50	+1.4
4,507,385	-		EFB2_04289	0.50	-0.1
4,507,385	-		EFB2_04289	0.50	+0.7
4,507,385	-		EFB2_04289	0.50	-2.7
4,507,385	-		EFB2_04289	0.50	+0.3
4,507,385	-		EFB2_04289	0.50	+0.1
4,507,385	-		EFB2_04289	0.50	-0.0
4,507,385	-		EFB2_04289	0.50	+0.3
4,507,385	-		EFB2_04289	0.50	-0.8
4,507,385	-		EFB2_04289	0.50	-0.5
4,507,385	-		EFB2_04289	0.50	-0.1
4,507,385	-		EFB2_04289	0.50	+0.3
4,507,385	-		EFB2_04289	0.50	-0.3
4,507,385	-		EFB2_04289	0.50	-2.8
4,507,385	-		EFB2_04289	0.50	-0.1
4,507,385	-		EFB2_04289	0.50	+1.4
4,507,385	-		EFB2_04289	0.50	-2.9
4,507,385	-		EFB2_04289	0.50	+0.6
4,507,385	-		EFB2_04289	0.50	+1.4
4,507,385	-		EFB2_04289	0.50	-0.0
4,507,385	-		EFB2_04289	0.50	+0.5
4,507,385	-		EFB2_04289	0.50	+0.3
4,507,385	-		EFB2_04289	0.50	-0.9
4,507,385	-		EFB2_04289	0.50	+0.2
4,507,385	-		EFB2_04289	0.50	+0.3
4,507,385	-		EFB2_04289	0.50	-0.1
4,507,385	-		EFB2_04289	0.50	-0.0
4,507,420	+		EFB2_04289	0.57	-2.1
4,507,420	+		EFB2_04289	0.57	-1.4
4,507,420	+		EFB2_04289	0.57	+1.2
4,507,420	+		EFB2_04289	0.57	+0.3
4,507,420	+		EFB2_04289	0.57	+0.0
4,507,420	+		EFB2_04289	0.57	+0.5
4,507,420	+		EFB2_04289	0.57	+2.3
4,507,421	-		EFB2_04289	0.57	-0.7
4,507,421	-		EFB2_04289	0.57	-0.6
4,507,421	-		EFB2_04289	0.57	-0.8
4,507,421	-		EFB2_04289	0.57	-1.2
4,507,421	-		EFB2_04289	0.57	-2.0
4,507,421	-		EFB2_04289	0.57	-0.7
4,507,421	-		EFB2_04289	0.57	+0.6
4,507,421	-		EFB2_04289	0.57	+0.7
4,507,421	-		EFB2_04289	0.57	-0.8
4,507,421	-		EFB2_04289	0.57	+0.6
4,507,486	-		EFB2_04289	0.71	+1.5
4,507,497	+		EFB2_04289	0.74	+0.8
4,507,497	+		EFB2_04289	0.74	-1.4
4,507,497	+		EFB2_04289	0.74	+0.0
4,507,497	+		EFB2_04289	0.74	+0.1
4,507,497	+		EFB2_04289	0.74	-2.1
4,507,497	+		EFB2_04289	0.74	-1.0
4,507,497	+		EFB2_04289	0.74	+0.5
4,507,497	+		EFB2_04289	0.74	-0.2
4,507,497	+		EFB2_04289	0.74	+0.6
4,507,498	-		EFB2_04289	0.74	+0.7
4,507,498	-		EFB2_04289	0.74	-2.5
4,507,498	-		EFB2_04289	0.74	-1.0
4,507,498	-		EFB2_04289	0.74	+0.8
4,507,498	-		EFB2_04289	0.74	+0.8
4,507,498	-		EFB2_04289	0.74	-0.2
4,507,498	-		EFB2_04289	0.74	+0.0
4,507,498	-		EFB2_04289	0.74	+1.0
4,507,498	-		EFB2_04289	0.74	-1.2
4,507,498	-		EFB2_04289	0.74	-0.5
4,507,555	-		EFB2_04289	0.86	-2.6
4,507,573	+				+0.3
4,507,573	+				+0.8
4,507,573	+				+0.2
4,507,573	+				-1.1
4,507,573	+				-1.3
4,507,573	+				+1.0
4,507,573	+				-0.3
4,507,573	+				+0.0
4,507,574	-				-2.9
4,507,574	-				+1.9
4,507,574	-				+2.3
4,507,574	-				+0.9
4,507,574	-				+0.1
4,507,596	+				+0.8
4,507,596	+				-0.9
4,507,596	+				-0.9
4,507,596	+				+0.2
4,507,596	+				+0.1
4,507,596	+				-1.0
4,507,596	+				+0.7
4,507,596	+				-0.9
4,507,596	+				+1.0
4,507,596	+				-1.0
4,507,597	-				+0.6
4,507,597	-				-0.5
4,507,597	-				+1.9
4,507,597	-				+0.7
4,507,597	-				+1.8
4,507,597	-				+0.1
4,507,615	+				+0.4
4,507,615	+				+0.5
4,507,615	+				-0.4
4,507,616	-				-1.5
4,507,616	-				-2.5
4,507,616	-				-1.1
4,507,616	-				+0.7
4,507,616	-				-0.8
4,507,628	+				-1.2
4,507,631	+				-1.0
4,507,631	+				+1.5
4,507,631	+				+1.6
4,507,631	+				+1.2
4,507,632	-				-1.0
4,507,632	-				+0.1
4,507,647	+				+0.1
4,507,647	+				-2.0
4,507,647	+				+1.5
4,507,648	-				-3.2
4,507,648	-				-1.4
4,507,648	-				-0.5
4,507,648	-				-0.8
4,507,648	-				-1.7
4,507,648	-				+0.6
4,507,648	-				+1.1
4,507,648	-				-0.2
4,507,649	+				+1.0
4,507,649	+				+1.1
4,507,649	+				-1.0
4,507,650	-				-1.0
4,507,667	-				-0.5
4,507,667	-				-1.3
4,507,674	+				+1.2
4,507,674	+				-0.6
4,507,674	+				+0.4
4,507,674	+				+0.3
4,507,674	+				-1.0
4,507,674	+				+0.5
4,507,675	-				-3.2
4,507,675	-				-0.1
4,507,675	-				-1.0
4,507,675	-				-3.7
4,507,675	-				+1.3
4,507,677	+				-0.5
4,507,677	+				-2.7
4,507,677	+				-0.1
4,507,677	+				+0.5
4,507,677	+				-0.4
4,507,678	-				-1.8
4,507,678	-				+0.9
4,507,678	-				-0.9
4,507,701	+				+1.3
4,507,738	+		EFB2_04290	0.12	+0.7
4,507,738	+		EFB2_04290	0.12	+1.3
4,507,764	+		EFB2_04290	0.19	-1.2
4,507,764	+		EFB2_04290	0.19	-2.7
4,507,764	+		EFB2_04290	0.19	-2.8
4,507,764	+		EFB2_04290	0.19	-0.7
4,507,764	+		EFB2_04290	0.19	-1.2
4,507,764	+		EFB2_04290	0.19	-0.9
4,507,764	+		EFB2_04290	0.19	+1.3
4,507,764	+		EFB2_04290	0.19	-0.7
4,507,764	+		EFB2_04290	0.19	-0.7
4,507,764	+		EFB2_04290	0.19	-1.8
4,507,764	+		EFB2_04290	0.19	-1.7
4,507,764	+		EFB2_04290	0.19	-1.0
4,507,764	+		EFB2_04290	0.19	-2.1
4,507,764	+		EFB2_04290	0.19	-2.5
4,507,765	-		EFB2_04290	0.19	+0.9
4,507,765	-		EFB2_04290	0.19	-0.2
4,507,765	-		EFB2_04290	0.19	+0.7
4,507,765	-		EFB2_04290	0.19	-1.0
4,507,765	-		EFB2_04290	0.19	+0.7
4,507,859	+		EFB2_04290	0.44	-2.0
4,507,859	+		EFB2_04290	0.44	-0.9
4,507,859	+		EFB2_04290	0.44	-1.7
4,507,859	+		EFB2_04290	0.44	+0.0
4,507,859	+		EFB2_04290	0.44	-0.3
4,507,860	-		EFB2_04290	0.44	-0.3
4,507,860	-		EFB2_04290	0.44	-3.1
4,507,860	-		EFB2_04290	0.44	-1.2
4,507,956	+		EFB2_04290	0.69	+1.0
4,507,956	+		EFB2_04290	0.69	+3.1
4,507,957	-		EFB2_04290	0.69	-1.2
4,507,957	-		EFB2_04290	0.69	-2.6
4,507,960	+		EFB2_04290	0.70	-1.4
4,507,960	+		EFB2_04290	0.70	+1.7
4,507,960	+		EFB2_04290	0.70	+0.3
4,507,960	+		EFB2_04290	0.70	-0.5
4,507,960	+		EFB2_04290	0.70	+1.3
4,507,960	+		EFB2_04290	0.70	+0.4
4,507,960	+		EFB2_04290	0.70	-0.3
4,507,960	+		EFB2_04290	0.70	-0.7
4,507,960	+		EFB2_04290	0.70	+1.1
4,507,960	+		EFB2_04290	0.70	-2.1
4,507,960	+		EFB2_04290	0.70	-1.1
4,507,960	+		EFB2_04290	0.70	-2.2
4,507,961	-		EFB2_04290	0.70	-1.4
4,507,961	-		EFB2_04290	0.70	-1.6
4,507,961	-		EFB2_04290	0.70	-0.7
4,507,961	-		EFB2_04290	0.70	+0.3
4,507,961	-		EFB2_04290	0.70	-1.7
4,507,961	-		EFB2_04290	0.70	-1.7
4,507,961	-		EFB2_04290	0.70	-1.1
4,508,074	+				-0.4
4,508,075	-				+0.9
4,508,110	+				+0.2
4,508,110	+				+0.5
4,508,110	+				-0.2
4,508,111	-				-0.6
4,508,111	-				+0.8
4,508,117	-				+0.1
4,508,117	-				-0.1
4,508,117	-				+2.5
4,508,147	-				+0.2
4,508,161	+				+0.8
4,508,208	+				+0.2
4,508,208	+				-1.2
4,508,209	-				+0.0
4,508,209	-				-1.7
4,508,277	-				-0.1
4,508,277	-				-0.7
4,508,283	+				-0.5
4,508,305	+				+3.1
4,508,306	-				-1.5
4,508,307	+				-0.4
4,508,307	+				-0.6
4,508,307	+				+0.0
4,508,307	+				-2.2
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