Strain Fitness in Escherichia fergusonii Becca around EFB2_03245

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
3,395,964	-		EFB2_03244	0.50	-0.4
3,396,086	-		EFB2_03244	0.65	+0.3
3,396,253	-		EFB2_03244	0.85	+1.3
3,396,266	+		EFB2_03244	0.87	+2.3
3,396,272	-		EFB2_03244	0.88	+0.1
3,396,272	-		EFB2_03244	0.88	+0.8
3,396,312	+				+1.3
3,396,313	-				+0.3
3,396,313	-				-2.1
3,396,313	-				-2.0
3,396,313	-				+0.4
3,396,320	-				+1.1
3,396,320	-				+2.0
3,396,320	-				-2.4
3,396,320	-				+0.0
3,396,320	-				+0.6
3,396,342	+				+0.9
3,396,350	-				+2.0
3,396,360	+				-1.3
3,396,360	+				+0.9
3,396,360	+				-1.0
3,396,361	-				-0.4
3,396,380	+				+1.1
3,396,381	-				+1.6
3,396,381	-				-1.6
3,396,387	+				+1.6
3,396,388	-				-0.2
3,396,417	+				+0.4
3,396,417	+				+2.9
3,396,417	+				+0.0
3,396,418	-				+0.8
3,396,418	-				-1.7
3,396,418	-				+1.9
3,396,426	+				-2.1
3,396,426	+				-1.4
3,396,427	-				-1.8
3,396,470	+				+1.0
3,396,471	-				+0.6
3,396,471	-				+0.8
3,396,505	+				+0.5
3,396,506	-				-0.2
3,396,506	-				+0.5
3,396,506	-				+1.6
3,396,506	-				-0.5
3,396,506	-				-3.6
3,396,522	+				+0.0
3,396,523	-				+0.3
3,396,575	+				-1.7
3,396,575	+				+0.5
3,396,575	+				+0.4
3,396,575	+				+0.6
3,396,575	+				+0.5
3,396,575	+				+1.2
3,396,575	+				-0.5
3,396,576	-				-0.0
3,396,576	-				+2.8
3,396,576	-				-2.4
3,396,576	-				+2.0
3,396,576	-				-1.7
3,396,576	-				-2.7
3,396,576	-				-0.6
3,396,576	-				+0.7
3,396,576	-				-0.3
3,396,600	+				+2.2
3,396,600	+				-0.3
3,396,600	+				+1.5
3,396,601	-				+0.2
3,396,601	-				-0.0
3,396,609	-				-2.5
3,396,637	+				-0.2
3,396,645	+				-0.8
3,396,645	+				-2.9
3,396,645	+				+1.0
3,396,646	-				-1.4
3,396,684	+				+1.3
3,396,684	+				+2.1
3,396,684	+				-1.5
3,396,684	+				+2.9
3,396,684	+				-1.5
3,396,685	-				+1.1
3,396,727	+				+0.3
3,396,727	+				-1.1
3,396,727	+				-0.3
3,396,727	+				-2.5
3,396,727	+				+0.3
3,396,727	+				+1.8
3,396,727	+				+0.2
3,396,727	+				-0.7
3,396,727	+				+0.5
3,396,727	+				-1.7
3,396,727	+				+0.2
3,396,727	+				-0.1
3,396,727	+				+0.4
3,396,727	+				-1.2
3,396,727	+				+0.7
3,396,727	+				+0.5
3,396,727	+				+0.9
3,396,728	-				+0.3
3,396,728	-				-0.9
3,396,728	-				+0.2
3,396,728	-				+1.9
3,396,728	-				+0.1
3,396,728	-				-3.0
3,396,728	-				-0.3
3,396,728	-				+0.1
3,396,728	-				-1.0
3,396,728	-				-1.8
3,396,728	-				-0.2
3,396,728	-				-3.2
3,396,728	-				-2.1
3,396,728	-				+0.8
3,396,728	-				-0.4
3,396,728	-				-1.3
3,396,728	-				+0.6
3,396,728	-				+1.0
3,396,728	-				+0.5
3,396,728	-				-2.4
3,396,728	-				+1.2
3,396,728	-				-0.2
3,396,728	-				+1.8
3,396,728	-				-0.8
3,396,728	-				+0.9
3,396,728	-				-1.6
3,396,770	+				-0.6
3,396,771	-				-1.9
3,396,811	+				-0.6
3,396,811	+				-2.7
3,396,811	+				+0.5
3,396,811	+				-2.2
3,396,812	-				+1.6
3,396,812	-				-1.9
3,396,812	-				+1.5
3,396,812	-				-0.3
3,396,812	-				-0.2
3,396,812	-				-0.3
3,396,813	+				+0.3
3,396,813	+				+1.0
3,396,813	+				+2.8
3,396,813	+				-2.3
3,396,813	+				-1.2
3,396,814	-				-1.6
3,396,814	-				+0.4
3,396,814	-				-1.4
3,396,814	-				+4.1
3,396,814	-				-1.3
3,396,814	-				+2.5
3,396,814	-				+0.4
3,396,818	+				+2.0
3,396,853	-				-1.7
3,396,860	+				+1.1
3,396,861	-				+1.9
3,396,877	+				-1.2
3,396,878	-				-1.7
3,396,878	-				-1.2
3,396,879	+				-0.3
3,396,879	+				+0.5
3,396,879	+				+2.2
3,396,879	+				+2.2
3,396,880	-				+1.5
3,396,880	-				-2.4
3,396,888	+				+0.3
3,396,888	+				+0.8
3,396,888	+				+0.2
3,396,888	+				-2.4
3,396,889	-				+0.2
3,396,889	-				+1.8
3,396,889	-				+0.3
3,396,892	+				-2.1
3,396,893	-				-0.0
3,396,893	-				-0.7
3,396,893	-				-1.2
3,396,894	+				-0.3
3,396,894	+				+0.3
3,396,894	+				+1.8
3,396,895	-				+1.3
3,396,895	-				-2.5
3,396,895	-				+1.5
3,396,896	+				-1.1
3,396,896	+				-1.6
3,396,896	+				+2.7
3,396,897	-				+1.3
3,396,897	-				-1.5
3,396,922	+				-0.3
3,396,939	-				-2.8
3,396,954	-				+1.0
3,396,954	-				+0.2
3,396,962	+				+2.1
3,396,962	+				+0.4
3,396,962	+				-1.2
3,396,962	+				+0.1
3,396,962	+				+0.0
3,396,963	-				-1.0
3,396,963	-				-2.5
3,396,981	-				+0.9
3,396,988	+				-1.8
3,396,988	+				+0.6
3,396,989	-				-0.9
3,397,006	-				+0.6
3,397,006	-				-1.6
3,397,103	-		EFB2_03245	0.16	+1.1
3,397,118	-		EFB2_03245	0.17	-0.8
3,397,165	+		EFB2_03245	0.22	+0.8
3,397,168	+		EFB2_03245	0.22	+0.6
3,397,168	+		EFB2_03245	0.22	+1.1
3,397,168	+		EFB2_03245	0.22	-0.8
3,397,177	+		EFB2_03245	0.23	+0.9
3,397,177	+		EFB2_03245	0.23	+1.0
3,397,178	-		EFB2_03245	0.23	-0.5
3,397,178	-		EFB2_03245	0.23	-0.9
3,397,178	-		EFB2_03245	0.23	-1.6
3,397,179	+		EFB2_03245	0.24	-1.2
3,397,197	+		EFB2_03245	0.25	+0.8
3,397,226	+		EFB2_03245	0.28	+3.0
3,397,226	+		EFB2_03245	0.28	-0.8
3,397,227	-		EFB2_03245	0.29	+1.1
3,397,282	-		EFB2_03245	0.34	-2.9
3,397,283	+		EFB2_03245	0.34	-1.1
3,397,284	-		EFB2_03245	0.34	+0.4
3,397,284	-		EFB2_03245	0.34	-2.5
3,397,324	+		EFB2_03245	0.39	+0.9
3,397,327	-		EFB2_03245	0.39	-2.7
3,397,327	-		EFB2_03245	0.39	+2.3
3,397,385	-		EFB2_03245	0.45	+0.2
3,397,389	+		EFB2_03245	0.45	+0.0
3,397,390	-		EFB2_03245	0.45	+0.3
3,397,461	-		EFB2_03245	0.53	-0.7
3,397,599	-		EFB2_03245	0.67	+1.2
3,397,683	+		EFB2_03245	0.76	-2.4
3,397,698	+		EFB2_03245	0.77	-0.7
3,397,699	-		EFB2_03245	0.78	+1.5
3,397,706	-		EFB2_03245	0.78	-2.6
3,397,761	+		EFB2_03245	0.84	-0.7
3,397,764	+		EFB2_03245	0.84	+0.5
3,397,802	-		EFB2_03245	0.88	-0.5
3,397,809	+		EFB2_03245	0.89	+0.8
3,397,810	-		EFB2_03245	0.89	-1.6
3,397,810	-		EFB2_03245	0.89	+0.6
3,397,903	+				+1.1
3,397,930	-				+0.4
3,397,930	-				-1.0
3,397,963	+				-1.4
3,397,964	-				-1.1
3,397,964	-				+1.7
3,397,991	-				+2.3
3,397,997	-				+1.5
3,397,997	-				-1.2
3,397,999	+				+0.8
3,397,999	+				-0.7
3,398,003	+				-1.0
3,398,004	-				-0.5
3,398,004	-				+0.0
3,398,022	+				+2.0
3,398,034	+				-0.3
3,398,034	+				+0.3
3,398,035	-				+0.7
3,398,035	-				+1.7
3,398,043	+				-1.9
3,398,043	+				+1.2
3,398,043	+				-0.1
3,398,043	+				+0.4
3,398,044	-				-0.3
3,398,044	-				+1.6
3,398,108	+				-2.2
3,398,108	+				+0.0
3,398,108	+				-0.1
3,398,108	+				+0.4
3,398,108	+				-1.8
3,398,108	+				-0.7
3,398,108	+				-0.8
3,398,108	+				+0.2
3,398,108	+				-0.8
3,398,109	-				+2.1
3,398,109	-				+0.8
3,398,109	-				+0.8
3,398,109	-				+1.3
3,398,109	-				+0.9
3,398,109	-				+1.8
3,398,109	-				-1.1
3,398,109	-				+1.0
3,398,113	+				-0.1
3,398,114	-				+0.8
3,398,114	-				+1.1
3,398,114	-				+0.2
3,398,116	+				+0.3
3,398,116	+				+0.2
3,398,116	+				-1.0
3,398,116	+				-2.0
3,398,116	+				+0.5
3,398,117	-				-0.5
3,398,139	+				-1.2
3,398,151	+				-2.2
3,398,151	+				-0.4
3,398,152	-				+2.3
3,398,152	-				-0.4
3,398,152	-				-0.7
3,398,162	+				+0.2
3,398,162	+				-0.1
3,398,162	+				-1.7
3,398,163	-				-1.3
3,398,163	-				+1.3
3,398,166	+				+0.8
3,398,166	+				-2.7
3,398,167	-				+1.7
3,398,170	+				-1.1
3,398,182	+				+1.9
3,398,182	+				+1.6
3,398,195	+				-0.2
3,398,195	+				-3.5
3,398,195	+				-1.7
3,398,195	+				+2.7
3,398,196	-				+1.1
3,398,196	-				+0.0
3,398,196	-				+0.3
3,398,196	-				-3.0
3,398,196	-				-1.6
3,398,196	-				+1.4
3,398,216	+				-0.7
3,398,216	+				-1.6
3,398,217	-				-0.7
3,398,293	-		EFB2_03246	0.23	+0.3
3,398,307	+		EFB2_03246	0.27	-0.1
3,398,329	+		EFB2_03246	0.32	+0.0
3,398,329	+		EFB2_03246	0.32	-1.1
3,398,329	+		EFB2_03246	0.32	-1.3
3,398,329	+		EFB2_03246	0.32	+0.9
3,398,329	+		EFB2_03246	0.32	-0.8
3,398,329	+		EFB2_03246	0.32	-1.1
3,398,329	+		EFB2_03246	0.32	-1.1
3,398,329	+		EFB2_03246	0.32	+0.3
3,398,330	-		EFB2_03246	0.32	-2.7
3,398,330	-		EFB2_03246	0.32	+0.0
3,398,330	-		EFB2_03246	0.32	-0.8
3,398,330	-		EFB2_03246	0.32	+0.9
3,398,330	-		EFB2_03246	0.32	+1.1
3,398,330	-		EFB2_03246	0.32	-0.3
3,398,330	-		EFB2_03246	0.32	+0.5
3,398,330	-		EFB2_03246	0.32	+0.0
3,398,338	+		EFB2_03246	0.34	-0.1
3,398,339	-		EFB2_03246	0.35	-1.7
3,398,339	-		EFB2_03246	0.35	+0.6
3,398,374	+		EFB2_03246	0.43	-1.2
3,398,374	+		EFB2_03246	0.43	+0.7
3,398,374	+		EFB2_03246	0.43	+0.5
3,398,374	+		EFB2_03246	0.43	+0.2
3,398,374	+		EFB2_03246	0.43	+1.7
3,398,374	+		EFB2_03246	0.43	+1.5
3,398,374	+		EFB2_03246	0.43	+1.5
3,398,374	+		EFB2_03246	0.43	-0.7
3,398,374	+		EFB2_03246	0.43	-0.8
3,398,374	+		EFB2_03246	0.43	+0.8
3,398,374	+		EFB2_03246	0.43	+0.9
3,398,374	+		EFB2_03246	0.43	-1.5
3,398,374	+		EFB2_03246	0.43	+0.0
3,398,374	+		EFB2_03246	0.43	+2.0
3,398,374	+		EFB2_03246	0.43	+0.6
3,398,374	+		EFB2_03246	0.43	-0.8
3,398,374	+		EFB2_03246	0.43	-0.9
3,398,375	-		EFB2_03246	0.43	-0.2
3,398,375	-		EFB2_03246	0.43	+0.8
3,398,375	-		EFB2_03246	0.43	+0.1
3,398,375	-		EFB2_03246	0.43	-0.2
3,398,375	-		EFB2_03246	0.43	-0.6
3,398,375	-		EFB2_03246	0.43	+1.0
3,398,375	-		EFB2_03246	0.43	-1.6
3,398,375	-		EFB2_03246	0.43	-0.8
3,398,375	-		EFB2_03246	0.43	-1.1
3,398,375	-		EFB2_03246	0.43	-0.7
3,398,375	-		EFB2_03246	0.43	-2.7
3,398,375	-		EFB2_03246	0.43	+0.7
3,398,375	-		EFB2_03246	0.43	+1.2
3,398,375	-		EFB2_03246	0.43	-0.4
3,398,375	-		EFB2_03246	0.43	-1.1
3,398,375	-		EFB2_03246	0.43	-1.7
3,398,375	-		EFB2_03246	0.43	-0.7
3,398,375	-		EFB2_03246	0.43	+0.2
3,398,375	-		EFB2_03246	0.43	-0.0
3,398,375	-		EFB2_03246	0.43	-1.7
3,398,375	-		EFB2_03246	0.43	+1.4
3,398,375	-		EFB2_03246	0.43	-1.5
3,398,375	-		EFB2_03246	0.43	+2.3
3,398,376	+		EFB2_03246	0.44	-2.7
3,398,376	+		EFB2_03246	0.44	-0.9
3,398,376	+		EFB2_03246	0.44	+0.4
3,398,376	+		EFB2_03246	0.44	+0.8
3,398,376	+		EFB2_03246	0.44	+1.1
3,398,376	+		EFB2_03246	0.44	-1.1
3,398,376	+		EFB2_03246	0.44	+0.6
3,398,376	+		EFB2_03246	0.44	+0.1
3,398,377	-		EFB2_03246	0.44	-1.0
3,398,377	-		EFB2_03246	0.44	-1.0
3,398,377	-		EFB2_03246	0.44	+0.2
3,398,377	-		EFB2_03246	0.44	+2.3
3,398,377	-		EFB2_03246	0.44	-2.4
3,398,377	-		EFB2_03246	0.44	+0.8
3,398,377	-		EFB2_03246	0.44	-1.0
3,398,377	-		EFB2_03246	0.44	+1.3
3,398,377	-		EFB2_03246	0.44	+0.4
3,398,402	+		EFB2_03246	0.50	-2.1
3,398,402	+		EFB2_03246	0.50	+1.2
3,398,402	+		EFB2_03246	0.50	-0.6
3,398,402	+		EFB2_03246	0.50	-1.6
3,398,402	+		EFB2_03246	0.50	+1.5
3,398,403	-		EFB2_03246	0.50	-1.0
3,398,403	-		EFB2_03246	0.50	+1.2
3,398,403	-		EFB2_03246	0.50	+0.9
3,398,457	+		EFB2_03246	0.63	-2.7
3,398,457	+		EFB2_03246	0.63	-2.8
3,398,457	+		EFB2_03246	0.63	-0.3
3,398,458	-		EFB2_03246	0.64	-0.7
3,398,458	-		EFB2_03246	0.64	+0.3
3,398,506	+		EFB2_03246	0.75	-1.2
3,398,536	-		EFB2_03246	0.82	+0.4
3,398,536	-		EFB2_03246	0.82	+1.4
3,398,536	-		EFB2_03246	0.82	-2.0
3,398,548	+		EFB2_03246	0.85	-0.2
3,398,548	+		EFB2_03246	0.85	-1.1
3,398,562	+		EFB2_03246	0.89	+0.3
3,398,563	-		EFB2_03246	0.89	+1.2
3,398,620	+				-1.9
3,398,620	+				-0.1
3,398,620	+				+0.8
3,398,620	+				-2.1
3,398,621	-				+0.5
3,398,621	-				-1.4
3,398,634	+				+0.6
3,398,635	-				+1.6
3,398,635	-				+0.5
3,398,639	+				-0.6
3,398,640	-				-0.3
3,398,640	-				-1.5
3,398,655	+				+0.1
3,398,656	-				+0.0
3,398,656	-				-0.1
3,398,671	+				-1.8
3,398,672	-				+0.5
3,398,672	-				-2.8
3,398,674	+				-3.8
3,398,674	+				-0.4
3,398,674	+				+1.0
3,398,675	-				-1.8
3,398,675	-				-2.3
3,398,675	-				+2.9
3,398,675	-				-1.5
3,398,709	+				-0.2
3,398,709	+				-0.2
3,398,730	+				+2.9
3,398,730	+				-0.3
3,398,731	-				-1.8
3,398,731	-				+1.0
3,398,731	-				+0.4
3,398,731	-				-1.4
3,398,758	+				-2.8
3,398,758	+				+0.9
3,398,758	+				-0.4
3,398,758	+				+1.8
3,398,758	+				+0.4
3,398,799	+				+1.1
3,398,799	+				-0.3
3,398,799	+				-0.9
3,398,800	-				+0.3
3,398,800	-				+0.4
3,398,837	-		EFB2_03247	0.17	-0.5
3,398,896	+		EFB2_03247	0.42	+1.4
3,398,896	+		EFB2_03247	0.42	+1.3
3,398,902	+		EFB2_03247	0.44	-1.7
3,398,902	+		EFB2_03247	0.44	-0.1
3,398,902	+		EFB2_03247	0.44	-1.5
3,398,902	+		EFB2_03247	0.44	-2.2
3,398,903	-		EFB2_03247	0.45	-1.0
3,398,903	-		EFB2_03247	0.45	-1.2
3,398,903	-		EFB2_03247	0.45	-1.2