Strain Fitness in Escherichia fergusonii Becca around EFB2_02008

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
2,164,301	-				-1.4
2,164,301	-				-0.4
2,164,309	+				-1.2
2,164,309	+				-1.9
2,164,309	+				-0.3
2,164,309	+				+0.1
2,164,309	+				-2.8
2,164,309	+				+0.6
2,164,309	+				+1.9
2,164,309	+				-0.4
2,164,309	+				-0.6
2,164,309	+				+0.1
2,164,309	+				+2.9
2,164,309	+				+2.9
2,164,309	+				+1.4
2,164,309	+				-0.1
2,164,309	+				+1.4
2,164,309	+				-2.2
2,164,309	+				-1.1
2,164,309	+				+0.4
2,164,309	+				+0.9
2,164,309	+				+0.1
2,164,309	+				-1.1
2,164,309	+				+0.3
2,164,309	+				+0.3
2,164,309	+				+0.5
2,164,309	+				-2.1
2,164,309	+				+0.1
2,164,309	+				-1.8
2,164,309	+				+3.0
2,164,309	+				-1.1
2,164,309	+				+0.4
2,164,309	+				-1.5
2,164,309	+				-0.6
2,164,309	+				+1.8
2,164,309	+				+1.2
2,164,309	+				+0.4
2,164,309	+				+0.1
2,164,309	+				-0.0
2,164,309	+				+1.1
2,164,309	+				-0.7
2,164,309	+				+0.9
2,164,309	+				-1.7
2,164,309	+				-0.8
2,164,309	+				+1.0
2,164,309	+				+1.9
2,164,309	+				-1.5
2,164,309	+				+0.9
2,164,310	-				-1.8
2,164,310	-				+0.8
2,164,310	-				-2.9
2,164,310	-				-2.6
2,164,310	-				+0.9
2,164,310	-				-0.4
2,164,310	-				+0.2
2,164,310	-				+0.1
2,164,310	-				+1.9
2,164,310	-				-1.8
2,164,310	-				+1.3
2,164,310	-				+1.0
2,164,310	-				+0.6
2,164,310	-				+0.8
2,164,310	-				-1.1
2,164,310	-				-0.3
2,164,310	-				-0.2
2,164,310	-				-2.3
2,164,310	-				+1.1
2,164,310	-				+0.3
2,164,310	-				-1.4
2,164,310	-				+0.7
2,164,310	-				+2.2
2,164,310	-				-2.0
2,164,310	-				-1.1
2,164,310	-				+1.9
2,164,310	-				-0.6
2,164,310	-				+0.6
2,164,310	-				+1.6
2,164,310	-				-1.6
2,164,310	-				+0.4
2,164,310	-				-0.1
2,164,310	-				-0.8
2,164,310	-				+2.4
2,164,310	-				-0.1
2,164,310	-				+1.4
2,164,310	-				+0.7
2,164,310	-				-0.4
2,164,310	-				-1.3
2,164,310	-				+0.5
2,164,310	-				-1.0
2,164,310	-				+0.9
2,164,310	-				-1.5
2,164,310	-				-0.5
2,164,310	-				-0.6
2,164,310	-				+1.3
2,164,310	-				-0.5
2,164,310	-				+0.4
2,164,310	-				-1.0
2,164,310	-				-0.7
2,164,310	-				-1.1
2,164,310	-				+0.8
2,164,310	-				+0.5
2,164,310	-				-1.8
2,164,313	+				-0.5
2,164,313	+				-0.5
2,164,314	-				-1.0
2,164,466	+		EFB2_02007	0.16	+2.6
2,164,466	+		EFB2_02007	0.16	+2.4
2,164,466	+		EFB2_02007	0.16	+1.8
2,164,466	+		EFB2_02007	0.16	-2.3
2,164,466	+		EFB2_02007	0.16	+0.3
2,164,466	+		EFB2_02007	0.16	+4.4
2,164,466	+		EFB2_02007	0.16	+1.1
2,164,466	+		EFB2_02007	0.16	-0.2
2,164,467	-		EFB2_02007	0.17	+0.0
2,164,467	-		EFB2_02007	0.17	+0.4
2,164,467	-		EFB2_02007	0.17	+0.8
2,164,467	-		EFB2_02007	0.17	+0.3
2,164,467	-		EFB2_02007	0.17	-1.1
2,164,467	-		EFB2_02007	0.17	+0.0
2,164,467	-		EFB2_02007	0.17	+0.7
2,164,467	-		EFB2_02007	0.17	+2.2
2,164,467	-		EFB2_02007	0.17	+1.4
2,164,467	-		EFB2_02007	0.17	+0.3
2,164,467	-		EFB2_02007	0.17	+0.4
2,164,655	+		EFB2_02007	0.35	+0.9
2,164,692	-		EFB2_02007	0.39	+1.1
2,164,764	+		EFB2_02007	0.46	+0.1
2,164,764	+		EFB2_02007	0.46	-0.6
2,164,764	+		EFB2_02007	0.46	-0.0
2,164,765	-		EFB2_02007	0.46	+0.9
2,164,817	+		EFB2_02007	0.52	-1.7
2,164,910	+		EFB2_02007	0.61	+0.4
2,164,962	-		EFB2_02007	0.66	-1.1
2,164,962	-		EFB2_02007	0.66	-1.3
2,165,009	+		EFB2_02007	0.71	-0.2
2,165,010	-		EFB2_02007	0.71	-0.5
2,165,071	+		EFB2_02007	0.77	-1.3
2,165,071	+		EFB2_02007	0.77	-0.5
2,165,071	+		EFB2_02007	0.77	-0.1
2,165,071	+		EFB2_02007	0.77	-0.1
2,165,071	+		EFB2_02007	0.77	+1.4
2,165,142	+		EFB2_02007	0.84	-0.9
2,165,274	-				-1.0
2,165,291	+				-0.9
2,165,304	+				+0.4
2,165,304	+				-0.7
2,165,304	+				+0.1
2,165,305	-				-0.1
2,165,305	-				+1.6
2,165,308	+				-0.1
2,165,308	+				+0.2
2,165,308	+				-1.0
2,165,308	+				+0.8
2,165,309	-				-0.6
2,165,309	-				+0.4
2,165,309	-				+0.1
2,165,309	-				+1.0
2,165,419	+				+1.2
2,165,419	+				+0.7
2,165,419	+				-0.3
2,165,419	+				-0.6
2,165,419	+				+2.4
2,165,419	+				+0.9
2,165,420	-				+0.1
2,165,420	-				-2.6
2,165,420	-				+0.9
2,165,420	-				-0.6
2,165,420	-				-0.2
2,165,420	-				+1.0
2,165,420	-				-2.4
2,165,420	-				-0.9
2,165,420	-				-1.1
2,165,420	-				-0.7
2,165,420	-				-0.3
2,165,420	-				-1.7
2,165,420	-				+2.3
2,165,522	-		EFB2_02008	0.14	-1.5
2,165,522	-		EFB2_02008	0.14	+0.3
2,165,522	-		EFB2_02008	0.14	-0.7
2,165,522	-		EFB2_02008	0.14	+1.3
2,165,522	-		EFB2_02008	0.14	+0.3
2,165,533	+		EFB2_02008	0.15	-0.4
2,165,569	+		EFB2_02008	0.17	+1.0
2,165,569	+		EFB2_02008	0.17	-1.4
2,165,673	+		EFB2_02008	0.23	+0.1
2,165,673	+		EFB2_02008	0.23	+0.9
2,165,673	+		EFB2_02008	0.23	+3.0
2,165,795	+		EFB2_02008	0.30	-1.0
2,165,795	+		EFB2_02008	0.30	+0.1
2,165,796	-		EFB2_02008	0.31	-1.7
2,165,796	-		EFB2_02008	0.31	-1.4
2,165,876	+		EFB2_02008	0.35	+0.6
2,165,876	+		EFB2_02008	0.35	+0.4
2,165,876	+		EFB2_02008	0.35	+0.9
2,165,876	+		EFB2_02008	0.35	-2.4
2,165,876	+		EFB2_02008	0.35	-0.6
2,165,876	+		EFB2_02008	0.35	-3.0
2,165,876	+		EFB2_02008	0.35	+0.6
2,165,876	+		EFB2_02008	0.35	+0.4
2,165,877	-		EFB2_02008	0.35	+1.4
2,165,877	-		EFB2_02008	0.35	+0.1
2,165,877	-		EFB2_02008	0.35	+0.2
2,165,877	-		EFB2_02008	0.35	-0.6
2,165,877	-		EFB2_02008	0.35	-1.3
2,165,877	-		EFB2_02008	0.35	+0.9
2,165,877	-		EFB2_02008	0.35	+1.0
2,165,877	-		EFB2_02008	0.35	+0.0
2,165,877	-		EFB2_02008	0.35	+0.2
2,165,877	-		EFB2_02008	0.35	+0.3
2,165,877	-		EFB2_02008	0.35	-0.1
2,165,880	+		EFB2_02008	0.36	-2.6
2,165,880	+		EFB2_02008	0.36	+1.2
2,165,880	+		EFB2_02008	0.36	-2.3
2,165,880	+		EFB2_02008	0.36	+0.9
2,165,881	-		EFB2_02008	0.36	+1.0
2,165,904	+		EFB2_02008	0.37	+1.6
2,165,905	-		EFB2_02008	0.37	+0.2
2,165,905	-		EFB2_02008	0.37	-0.2
2,165,916	+		EFB2_02008	0.38	-0.4
2,165,916	+		EFB2_02008	0.38	-0.6
2,165,917	-		EFB2_02008	0.38	-0.1
2,165,917	-		EFB2_02008	0.38	-2.9
2,166,063	+		EFB2_02008	0.47	+1.5
2,166,063	+		EFB2_02008	0.47	+3.9
2,166,063	+		EFB2_02008	0.47	-0.7
2,166,064	-		EFB2_02008	0.47	+2.4
2,166,064	-		EFB2_02008	0.47	+0.1
2,166,114	-		EFB2_02008	0.50	+2.2
2,166,174	+		EFB2_02008	0.53	-1.7
2,166,174	+		EFB2_02008	0.53	+0.2
2,166,175	-		EFB2_02008	0.53	-1.2
2,166,175	-		EFB2_02008	0.53	-1.4
2,166,177	+		EFB2_02008	0.53	-0.1
2,166,178	-		EFB2_02008	0.54	+0.8
2,166,178	-		EFB2_02008	0.54	+1.4
2,166,178	-		EFB2_02008	0.54	-1.0
2,166,192	+		EFB2_02008	0.54	-0.8
2,166,192	+		EFB2_02008	0.54	+0.2
2,166,192	+		EFB2_02008	0.54	-0.9
2,166,213	+		EFB2_02008	0.56	+1.5
2,166,214	-		EFB2_02008	0.56	-2.3
2,166,214	-		EFB2_02008	0.56	-0.1
2,166,248	+		EFB2_02008	0.58	-0.8
2,166,248	+		EFB2_02008	0.58	-0.6
2,166,248	+		EFB2_02008	0.58	+0.6
2,166,248	+		EFB2_02008	0.58	-0.0
2,166,267	+		EFB2_02008	0.59	-0.9
2,166,267	+		EFB2_02008	0.59	+1.6
2,166,267	+		EFB2_02008	0.59	-1.6
2,166,268	-		EFB2_02008	0.59	-0.9
2,166,286	-		EFB2_02008	0.60	+1.0
2,166,286	-		EFB2_02008	0.60	-1.6
2,166,373	+		EFB2_02008	0.65	-1.6
2,166,373	+		EFB2_02008	0.65	-0.5
2,166,373	+		EFB2_02008	0.65	+0.9
2,166,373	+		EFB2_02008	0.65	+0.4
2,166,373	+		EFB2_02008	0.65	-1.6
2,166,373	+		EFB2_02008	0.65	-0.8
2,166,373	+		EFB2_02008	0.65	+0.9
2,166,373	+		EFB2_02008	0.65	-1.3
2,166,373	+		EFB2_02008	0.65	-2.6
2,166,373	+		EFB2_02008	0.65	-1.6
2,166,373	+		EFB2_02008	0.65	+1.4
2,166,373	+		EFB2_02008	0.65	+0.1
2,166,373	+		EFB2_02008	0.65	+0.4
2,166,373	+		EFB2_02008	0.65	+1.9
2,166,373	+		EFB2_02008	0.65	+0.4
2,166,373	+		EFB2_02008	0.65	-2.1
2,166,373	+		EFB2_02008	0.65	+1.7
2,166,373	+		EFB2_02008	0.65	-0.1
2,166,373	+		EFB2_02008	0.65	-1.4
2,166,374	-		EFB2_02008	0.65	+2.0
2,166,374	-		EFB2_02008	0.65	+0.0
2,166,374	-		EFB2_02008	0.65	-1.4
2,166,374	-		EFB2_02008	0.65	-0.0
2,166,374	-		EFB2_02008	0.65	-0.2
2,166,374	-		EFB2_02008	0.65	+0.3
2,166,374	-		EFB2_02008	0.65	+0.7
2,166,374	-		EFB2_02008	0.65	-1.4
2,166,374	-		EFB2_02008	0.65	-1.6
2,166,374	-		EFB2_02008	0.65	-0.9
2,166,374	-		EFB2_02008	0.65	-1.4
2,166,374	-		EFB2_02008	0.65	-1.1
2,166,374	-		EFB2_02008	0.65	+0.8
2,166,374	-		EFB2_02008	0.65	+0.7
2,166,378	+		EFB2_02008	0.66	-0.2
2,166,378	+		EFB2_02008	0.66	+1.0
2,166,384	+		EFB2_02008	0.66	-1.6
2,166,384	+		EFB2_02008	0.66	+1.3
2,166,384	+		EFB2_02008	0.66	+1.4
2,166,385	-		EFB2_02008	0.66	+1.7
2,166,385	-		EFB2_02008	0.66	-2.0
2,166,424	+		EFB2_02008	0.68	+0.0
2,166,424	+		EFB2_02008	0.68	+1.0
2,166,424	+		EFB2_02008	0.68	+1.3
2,166,467	-		EFB2_02008	0.71	+0.9
2,166,467	-		EFB2_02008	0.71	-1.0
2,166,494	-		EFB2_02008	0.73	+0.6
2,166,563	+		EFB2_02008	0.77	+0.7
2,166,564	-		EFB2_02008	0.77	+1.3
2,166,592	-		EFB2_02008	0.78	+0.5
2,166,684	+		EFB2_02008	0.84	-0.4
2,166,685	-		EFB2_02008	0.84	-0.5
2,166,702	+		EFB2_02008	0.85	+0.3
2,166,735	+		EFB2_02008	0.87	+0.6
2,166,796	+				+0.9
2,166,796	+				-1.8
2,166,796	+				+1.0
2,166,797	-				-1.4
2,166,797	-				+2.8
2,166,797	-				+0.9
2,166,907	-				-0.5
2,166,907	-				-1.2
2,167,043	+				-0.8
2,167,043	+				+2.5
2,167,043	+				+0.3
2,167,043	+				+1.3
2,167,043	+				-0.9
2,167,044	-				-0.7
2,167,044	-				+1.3
2,167,076	-				+0.1
2,167,095	+				+0.5
2,167,095	+				+0.1
2,167,095	+				-0.6
2,167,095	+				-0.3
2,167,096	-				+0.9
2,167,096	-				+0.1
2,167,100	-				+0.2
2,167,113	+				+0.3
2,167,121	+				+1.0
2,167,122	-				+1.5
2,167,127	+				-1.2
2,167,128	-				+0.5
2,167,258	+		EFB2_02009	0.30	+0.7
2,167,258	+		EFB2_02009	0.30	-0.4
2,167,259	-		EFB2_02009	0.30	-0.9
2,167,259	-		EFB2_02009	0.30	+1.0
2,167,259	-		EFB2_02009	0.30	-1.5
2,167,303	+		EFB2_02009	0.44	-1.0
2,167,303	+		EFB2_02009	0.44	-1.1
2,167,303	+		EFB2_02009	0.44	+1.3
2,167,304	-		EFB2_02009	0.45	-1.0
2,167,405	+		EFB2_02009	0.77	-1.7
2,167,405	+		EFB2_02009	0.77	-0.4
2,167,406	-		EFB2_02009	0.77	-1.6
2,167,429	+		EFB2_02009	0.84	+2.1
2,167,430	-		EFB2_02009	0.85	+0.5
2,167,430	-		EFB2_02009	0.85	+0.1
2,167,430	-		EFB2_02009	0.85	+0.1
2,167,430	-		EFB2_02009	0.85	-0.7
2,167,430	-		EFB2_02009	0.85	+0.9
2,167,433	-		EFB2_02009	0.86	+0.5
2,167,433	-		EFB2_02009	0.86	+0.2
2,167,433	-		EFB2_02009	0.86	+1.2
2,167,506	+				-3.6
2,167,576	+				-0.7
2,167,696	-				-0.1
2,167,696	-				-2.2
2,167,711	-				+1.1
2,167,711	-				+0.9
2,167,711	-				+0.4
2,167,711	-				+2.3
2,167,739	+				-1.6
2,167,740	-				-0.6
2,167,740	-				-0.1
2,167,740	-				+0.7
2,167,740	-				-0.1
2,167,745	+				+0.5
2,167,745	+				+1.9
2,167,745	+				-0.9
2,167,745	+				+0.1
2,167,745	+				-2.5
2,167,745	+				-0.1
2,167,745	+				-0.5
2,167,745	+				-0.2
2,167,745	+				-0.4
2,167,745	+				+1.2
2,167,745	+				+1.0
2,167,745	+				-1.8
2,167,745	+				+1.4
2,167,745	+				-0.8
2,167,745	+				-0.1
2,167,745	+				-1.9
2,167,745	+				+0.9
2,167,745	+				-1.6
2,167,745	+				-0.6
2,167,745	+				+1.0
2,167,745	+				-0.5
2,167,745	+				+2.5
2,167,745	+				-0.5
2,167,745	+				-2.4
2,167,745	+				+0.9
2,167,745	+				+2.3
2,167,745	+				-0.0
2,167,745	+				-0.9
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2,167,853	+				-1.0
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2,167,854	-				-0.5
2,167,872	+		EFB2_02010	0.15	-2.3
2,167,872	+		EFB2_02010	0.15	+0.8
2,167,872	+		EFB2_02010	0.15	-0.2
2,167,872	+		EFB2_02010	0.15	-1.5
2,167,873	-		EFB2_02010	0.15	-1.1
2,167,880	+		EFB2_02010	0.17	-0.5
2,167,880	+		EFB2_02010	0.17	-0.7
2,167,881	-		EFB2_02010	0.18	+1.5
2,167,902	+		EFB2_02010	0.24	-0.0
2,167,902	+		EFB2_02010	0.24	+2.5
2,167,910	+		EFB2_02010	0.26	+1.3
2,167,932	+		EFB2_02010	0.33	-1.9
2,167,932	+		EFB2_02010	0.33	-1.4
2,167,932	+		EFB2_02010	0.33	-2.2
2,167,932	+		EFB2_02010	0.33	+0.3
2,167,933	-		EFB2_02010	0.33	-0.3
2,167,933	-		EFB2_02010	0.33	-1.1
2,167,939	+		EFB2_02010	0.35	+1.0
2,167,939	+		EFB2_02010	0.35	+0.9
2,167,939	+		EFB2_02010	0.35	-0.4