Strain Fitness in Escherichia fergusonii Becca around EFB2_01861

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
1,970,332	+		EFB2_01859	0.38	-0.6
1,970,332	+		EFB2_01859	0.38	+0.7
1,970,332	+		EFB2_01859	0.38	-1.9
1,970,332	+		EFB2_01859	0.38	-0.2
1,970,332	+		EFB2_01859	0.38	+0.9
1,970,332	+		EFB2_01859	0.38	-0.5
1,970,332	+		EFB2_01859	0.38	-1.3
1,970,332	+		EFB2_01859	0.38	-0.1
1,970,332	+		EFB2_01859	0.38	+0.4
1,970,332	+		EFB2_01859	0.38	+0.2
1,970,332	+		EFB2_01859	0.38	-0.5
1,970,332	+		EFB2_01859	0.38	+4.4
1,970,333	-		EFB2_01859	0.38	+1.8
1,970,333	-		EFB2_01859	0.38	+0.6
1,970,333	-		EFB2_01859	0.38	-0.1
1,970,333	-		EFB2_01859	0.38	+1.3
1,970,333	-		EFB2_01859	0.38	+0.4
1,970,333	-		EFB2_01859	0.38	-1.2
1,970,333	-		EFB2_01859	0.38	+0.9
1,970,333	-		EFB2_01859	0.38	-0.1
1,970,333	-		EFB2_01859	0.38	-1.1
1,970,333	-		EFB2_01859	0.38	+0.5
1,970,333	-		EFB2_01859	0.38	+4.1
1,970,334	+		EFB2_01859	0.38	-1.4
1,970,334	+		EFB2_01859	0.38	+1.0
1,970,334	+		EFB2_01859	0.38	+1.4
1,970,334	+		EFB2_01859	0.38	+0.4
1,970,334	+		EFB2_01859	0.38	-1.6
1,970,334	+		EFB2_01859	0.38	-1.1
1,970,335	-		EFB2_01859	0.38	+0.9
1,970,375	+		EFB2_01859	0.44	+1.2
1,970,376	-		EFB2_01859	0.45	+1.6
1,970,376	-		EFB2_01859	0.45	-0.0
1,970,376	-		EFB2_01859	0.45	+0.9
1,970,400	+		EFB2_01859	0.48	-1.5
1,970,400	+		EFB2_01859	0.48	-1.6
1,970,400	+		EFB2_01859	0.48	-1.3
1,970,401	-		EFB2_01859	0.48	+1.6
1,970,418	+		EFB2_01859	0.51	-1.2
1,970,418	+		EFB2_01859	0.51	-0.2
1,970,419	-		EFB2_01859	0.51	-0.8
1,970,427	+		EFB2_01859	0.52	+1.4
1,970,427	+		EFB2_01859	0.52	-1.5
1,970,427	+		EFB2_01859	0.52	+0.9
1,970,428	-		EFB2_01859	0.53	+0.4
1,970,428	-		EFB2_01859	0.53	-1.0
1,970,428	-		EFB2_01859	0.53	-0.1
1,970,513	-		EFB2_01859	0.66	-0.1
1,970,522	-		EFB2_01859	0.67	+0.0
1,970,540	+		EFB2_01859	0.70	+0.4
1,970,552	-		EFB2_01859	0.72	-0.8
1,970,552	-		EFB2_01859	0.72	+2.4
1,970,555	+		EFB2_01859	0.72	-0.3
1,970,555	+		EFB2_01859	0.72	-1.4
1,970,555	+		EFB2_01859	0.72	+1.1
1,970,555	+		EFB2_01859	0.72	-1.5
1,970,556	-		EFB2_01859	0.72	-2.3
1,970,556	-		EFB2_01859	0.72	-2.0
1,970,587	-		EFB2_01859	0.77	-0.9
1,970,587	-		EFB2_01859	0.77	-0.6
1,970,643	+		EFB2_01859	0.85	+0.5
1,970,643	+		EFB2_01859	0.85	+1.2
1,970,643	+		EFB2_01859	0.85	-0.7
1,970,643	+		EFB2_01859	0.85	+1.9
1,970,643	+		EFB2_01859	0.85	-0.2
1,970,643	+		EFB2_01859	0.85	+0.6
1,970,643	+		EFB2_01859	0.85	+2.0
1,970,643	+		EFB2_01859	0.85	-0.1
1,970,643	+		EFB2_01859	0.85	+3.1
1,970,643	+		EFB2_01859	0.85	+1.0
1,970,644	-		EFB2_01859	0.86	-0.9
1,970,644	-		EFB2_01859	0.86	+0.4
1,970,644	-		EFB2_01859	0.86	+0.3
1,970,644	-		EFB2_01859	0.86	+0.3
1,970,644	-		EFB2_01859	0.86	-0.6
1,970,644	-		EFB2_01859	0.86	+0.9
1,970,644	-		EFB2_01859	0.86	+0.6
1,970,644	-		EFB2_01859	0.86	+0.5
1,970,644	-		EFB2_01859	0.86	-0.7
1,970,644	-		EFB2_01859	0.86	-0.2
1,970,650	+		EFB2_01859	0.87	+1.6
1,970,650	+		EFB2_01859	0.87	-0.7
1,970,650	+		EFB2_01859	0.87	-0.6
1,970,650	+		EFB2_01859	0.87	-2.0
1,970,650	+		EFB2_01859	0.87	+2.4
1,970,650	+		EFB2_01859	0.87	+1.8
1,970,650	+		EFB2_01859	0.87	-0.0
1,970,650	+		EFB2_01859	0.87	+0.4
1,970,650	+		EFB2_01859	0.87	+0.7
1,970,650	+		EFB2_01859	0.87	-1.2
1,970,650	+		EFB2_01859	0.87	-1.6
1,970,650	+		EFB2_01859	0.87	+0.2
1,970,650	+		EFB2_01859	0.87	-1.0
1,970,651	-		EFB2_01859	0.87	+3.9
1,970,651	-		EFB2_01859	0.87	+0.8
1,970,651	-		EFB2_01859	0.87	-1.2
1,970,651	-		EFB2_01859	0.87	-0.8
1,970,651	-		EFB2_01859	0.87	-0.4
1,970,651	-		EFB2_01859	0.87	+1.1
1,970,651	-		EFB2_01859	0.87	-0.6
1,970,651	-		EFB2_01859	0.87	-0.6
1,970,651	-		EFB2_01859	0.87	+0.7
1,970,651	-		EFB2_01859	0.87	-0.0
1,970,651	-		EFB2_01859	0.87	+0.3
1,970,651	-		EFB2_01859	0.87	-0.8
1,970,651	-		EFB2_01859	0.87	-0.5
1,970,652	+		EFB2_01859	0.87	-0.8
1,970,652	+		EFB2_01859	0.87	-1.9
1,970,653	-		EFB2_01859	0.87	-2.1
1,970,667	-		EFB2_01859	0.89	+0.4
1,970,726	+				+0.1
1,970,726	+				-0.6
1,970,726	+				-0.2
1,970,726	+				+1.4
1,970,726	+				+0.1
1,970,726	+				-0.8
1,970,727	-				-0.4
1,970,727	-				+1.0
1,970,727	-				+0.4
1,970,727	-				+2.7
1,970,727	-				-0.6
1,970,727	-				+0.4
1,970,727	-				+0.7
1,970,727	-				-0.0
1,970,727	-				+0.7
1,970,728	+				-0.6
1,970,728	+				-2.8
1,970,728	+				+0.8
1,970,728	+				-0.3
1,970,728	+				-0.7
1,970,728	+				-0.9
1,970,728	+				+0.8
1,970,728	+				-0.5
1,970,728	+				+0.8
1,970,728	+				+0.5
1,970,728	+				-1.8
1,970,728	+				+1.1
1,970,728	+				-0.6
1,970,728	+				+1.4
1,970,728	+				+1.0
1,970,728	+				-0.1
1,970,728	+				+0.9
1,970,728	+				+0.1
1,970,728	+				-1.3
1,970,728	+				+0.5
1,970,728	+				-0.4
1,970,728	+				-1.1
1,970,728	+				+0.7
1,970,728	+				-0.5
1,970,728	+				+2.2
1,970,728	+				+0.1
1,970,728	+				-0.8
1,970,729	-				+0.1
1,970,729	-				+0.4
1,970,729	-				-0.1
1,970,729	-				-0.2
1,970,729	-				+2.1
1,970,729	-				+0.3
1,970,729	-				-2.8
1,970,729	-				+0.1
1,970,729	-				+0.4
1,970,729	-				-0.1
1,970,729	-				+1.2
1,970,729	-				-1.1
1,970,729	-				-0.0
1,970,729	-				-0.8
1,970,729	-				-0.7
1,970,729	-				+0.7
1,970,738	+				-1.4
1,970,738	+				-1.2
1,970,747	+				-1.8
1,970,754	-				+1.7
1,970,828	+				+0.3
1,970,828	+				+0.3
1,970,828	+				-0.0
1,970,828	+				-0.8
1,970,828	+				-1.6
1,970,829	-				+0.4
1,970,829	-				-2.5
1,970,829	-				+0.4
1,970,829	-				-1.1
1,970,850	+				+0.8
1,970,850	+				+0.8
1,970,850	+				-0.7
1,970,850	+				-0.6
1,970,850	+				-0.1
1,970,851	-				+2.1
1,970,851	-				-0.1
1,970,851	-				+0.2
1,970,898	+		EFB2_01860	0.22	+0.4
1,970,898	+		EFB2_01860	0.22	+0.9
1,970,905	+		EFB2_01860	0.24	+1.0
1,970,905	+		EFB2_01860	0.24	-0.2
1,970,905	+		EFB2_01860	0.24	+0.6
1,970,905	+		EFB2_01860	0.24	+0.5
1,970,946	+		EFB2_01860	0.37	-1.8
1,970,946	+		EFB2_01860	0.37	-2.1
1,970,947	-		EFB2_01860	0.38	-1.6
1,970,947	-		EFB2_01860	0.38	-1.2
1,970,947	-		EFB2_01860	0.38	-1.0
1,970,966	+		EFB2_01860	0.44	-1.0
1,970,966	+		EFB2_01860	0.44	-0.3
1,970,967	-		EFB2_01860	0.44	+1.8
1,970,995	-		EFB2_01860	0.53	-2.1
1,970,995	-		EFB2_01860	0.53	-0.6
1,970,995	-		EFB2_01860	0.53	+0.9
1,970,995	-		EFB2_01860	0.53	+1.8
1,971,019	-		EFB2_01860	0.61	+1.1
1,971,036	+		EFB2_01860	0.66	+1.8
1,971,036	+		EFB2_01860	0.66	-0.8
1,971,037	-		EFB2_01860	0.66	+0.2
1,971,037	-		EFB2_01860	0.66	-1.3
1,971,037	-		EFB2_01860	0.66	-1.4
1,971,037	-		EFB2_01860	0.66	-1.0
1,971,082	-		EFB2_01860	0.81	-2.3
1,971,082	-		EFB2_01860	0.81	+0.4
1,971,082	-		EFB2_01860	0.81	-2.3
1,971,082	-		EFB2_01860	0.81	+0.3
1,971,082	-		EFB2_01860	0.81	+0.6
1,971,087	-		EFB2_01860	0.82	+0.1
1,971,089	+		EFB2_01860	0.83	+0.7
1,971,089	+		EFB2_01860	0.83	+0.9
1,971,090	-		EFB2_01860	0.83	+0.2
1,971,134	+				-0.1
1,971,134	+				+0.2
1,971,134	+				+0.1
1,971,139	+				-1.6
1,971,196	+				+1.5
1,971,196	+				+1.1
1,971,196	+				+0.3
1,971,197	-				-0.1
1,971,197	-				-0.7
1,971,197	-				-0.3
1,971,203	+				+0.1
1,971,203	+				-0.6
1,971,204	-				-1.6
1,971,204	-				-2.0
1,971,204	-				-0.8
1,971,211	-				-1.2
1,971,216	+				-1.9
1,971,242	+				-0.8
1,971,243	-				+1.0
1,971,274	+				+0.6
1,971,275	-				-0.1
1,971,387	+				-0.2
1,971,388	-				+0.1
1,971,426	+		EFB2_01861	0.14	+0.6
1,971,426	+		EFB2_01861	0.14	+0.4
1,971,449	+		EFB2_01861	0.18	-2.6
1,971,449	+		EFB2_01861	0.18	-0.3
1,971,449	+		EFB2_01861	0.18	+1.0
1,971,449	+		EFB2_01861	0.18	+1.2
1,971,449	+		EFB2_01861	0.18	-0.3
1,971,449	+		EFB2_01861	0.18	-1.8
1,971,449	+		EFB2_01861	0.18	-0.8
1,971,449	+		EFB2_01861	0.18	-2.7
1,971,449	+		EFB2_01861	0.18	-0.2
1,971,449	+		EFB2_01861	0.18	+0.7
1,971,449	+		EFB2_01861	0.18	-1.5
1,971,449	+		EFB2_01861	0.18	-2.2
1,971,449	+		EFB2_01861	0.18	-0.3
1,971,449	+		EFB2_01861	0.18	-2.2
1,971,449	+		EFB2_01861	0.18	+1.1
1,971,449	+		EFB2_01861	0.18	+1.0
1,971,449	+		EFB2_01861	0.18	-0.4
1,971,449	+		EFB2_01861	0.18	-3.3
1,971,449	+		EFB2_01861	0.18	+1.6
1,971,449	+		EFB2_01861	0.18	-0.2
1,971,449	+		EFB2_01861	0.18	+0.8
1,971,450	-		EFB2_01861	0.18	-0.7
1,971,450	-		EFB2_01861	0.18	+0.0
1,971,450	-		EFB2_01861	0.18	-0.4
1,971,450	-		EFB2_01861	0.18	-0.8
1,971,450	-		EFB2_01861	0.18	+0.5
1,971,450	-		EFB2_01861	0.18	+2.0
1,971,450	-		EFB2_01861	0.18	+0.9
1,971,450	-		EFB2_01861	0.18	+0.8
1,971,450	-		EFB2_01861	0.18	-2.0
1,971,450	-		EFB2_01861	0.18	-1.3
1,971,450	-		EFB2_01861	0.18	-2.3
1,971,450	-		EFB2_01861	0.18	-2.3
1,971,450	-		EFB2_01861	0.18	+0.6
1,971,450	-		EFB2_01861	0.18	+0.7
1,971,450	-		EFB2_01861	0.18	-0.6
1,971,450	-		EFB2_01861	0.18	+2.0
1,971,487	+		EFB2_01861	0.23	+1.5
1,971,505	+		EFB2_01861	0.26	-0.2
1,971,505	+		EFB2_01861	0.26	-2.0
1,971,505	+		EFB2_01861	0.26	-0.4
1,971,518	+		EFB2_01861	0.28	-0.2
1,971,518	+		EFB2_01861	0.28	+0.7
1,971,518	+		EFB2_01861	0.28	-1.6
1,971,518	+		EFB2_01861	0.28	-2.5
1,971,519	-		EFB2_01861	0.28	+1.4
1,971,519	-		EFB2_01861	0.28	+0.5
1,971,519	-		EFB2_01861	0.28	-0.4
1,971,521	+		EFB2_01861	0.28	+1.4
1,971,521	+		EFB2_01861	0.28	-2.3
1,971,521	+		EFB2_01861	0.28	+0.3
1,971,521	+		EFB2_01861	0.28	-3.2
1,971,521	+		EFB2_01861	0.28	+1.1
1,971,521	+		EFB2_01861	0.28	+1.9
1,971,521	+		EFB2_01861	0.28	+3.4
1,971,521	+		EFB2_01861	0.28	+0.4
1,971,521	+		EFB2_01861	0.28	-0.8
1,971,521	+		EFB2_01861	0.28	+0.6
1,971,521	+		EFB2_01861	0.28	+0.3
1,971,521	+		EFB2_01861	0.28	-0.0
1,971,521	+		EFB2_01861	0.28	+1.4
1,971,521	+		EFB2_01861	0.28	+0.4
1,971,521	+		EFB2_01861	0.28	+1.0
1,971,521	+		EFB2_01861	0.28	-0.8
1,971,521	+		EFB2_01861	0.28	-1.3
1,971,521	+		EFB2_01861	0.28	+1.4
1,971,521	+		EFB2_01861	0.28	+1.3
1,971,521	+		EFB2_01861	0.28	+0.2
1,971,521	+		EFB2_01861	0.28	-1.5
1,971,521	+		EFB2_01861	0.28	+0.9
1,971,521	+		EFB2_01861	0.28	-0.4
1,971,521	+		EFB2_01861	0.28	-0.1
1,971,522	-		EFB2_01861	0.28	+0.1
1,971,522	-		EFB2_01861	0.28	+0.0
1,971,522	-		EFB2_01861	0.28	-1.2
1,971,522	-		EFB2_01861	0.28	-0.2
1,971,522	-		EFB2_01861	0.28	+0.6
1,971,522	-		EFB2_01861	0.28	-0.7
1,971,522	-		EFB2_01861	0.28	-1.3
1,971,522	-		EFB2_01861	0.28	+1.4
1,971,522	-		EFB2_01861	0.28	+0.5
1,971,522	-		EFB2_01861	0.28	-0.5
1,971,522	-		EFB2_01861	0.28	-0.2
1,971,522	-		EFB2_01861	0.28	-1.1
1,971,522	-		EFB2_01861	0.28	-2.8
1,971,522	-		EFB2_01861	0.28	+0.4
1,971,522	-		EFB2_01861	0.28	+0.8
1,971,522	-		EFB2_01861	0.28	-0.5
1,971,522	-		EFB2_01861	0.28	+0.5
1,971,522	-		EFB2_01861	0.28	+0.9
1,971,525	+		EFB2_01861	0.29	-0.1
1,971,525	+		EFB2_01861	0.29	+0.8
1,971,525	+		EFB2_01861	0.29	+1.1
1,971,525	+		EFB2_01861	0.29	-1.1
1,971,525	+		EFB2_01861	0.29	-0.4
1,971,525	+		EFB2_01861	0.29	+1.4
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