Strain Fitness in Escherichia fergusonii Becca around EFB2_01532

Experiment: phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae
1,603,486	+		EFB2_01530	0.77	+1.1
1,603,486	+		EFB2_01530	0.77	-1.8
1,603,486	+		EFB2_01530	0.77	+0.9
1,603,486	+		EFB2_01530	0.77	-0.4
1,603,486	+		EFB2_01530	0.77	-0.6
1,603,486	+		EFB2_01530	0.77	-0.5
1,603,486	+		EFB2_01530	0.77	+1.2
1,603,486	+		EFB2_01530	0.77	-1.0
1,603,486	+		EFB2_01530	0.77	-0.5
1,603,486	+		EFB2_01530	0.77	+1.0
1,603,486	+		EFB2_01530	0.77	-0.6
1,603,486	+		EFB2_01530	0.77	+0.0
1,603,486	+		EFB2_01530	0.77	+2.3
1,603,486	+		EFB2_01530	0.77	-0.7
1,603,486	+		EFB2_01530	0.77	+0.4
1,603,486	+		EFB2_01530	0.77	-2.4
1,603,487	-		EFB2_01530	0.77	-0.7
1,603,487	-		EFB2_01530	0.77	+0.3
1,603,487	-		EFB2_01530	0.77	+0.2
1,603,487	-		EFB2_01530	0.77	+1.2
1,603,487	-		EFB2_01530	0.77	+0.3
1,603,487	-		EFB2_01530	0.77	-0.3
1,603,487	-		EFB2_01530	0.77	+4.3
1,603,487	-		EFB2_01530	0.77	-0.7
1,603,487	-		EFB2_01530	0.77	+1.7
1,603,487	-		EFB2_01530	0.77	-0.8
1,603,487	-		EFB2_01530	0.77	+3.1
1,603,487	-		EFB2_01530	0.77	-2.8
1,603,492	+		EFB2_01530	0.78	+0.3
1,603,492	+		EFB2_01530	0.78	+0.8
1,603,492	+		EFB2_01530	0.78	+1.1
1,603,492	+		EFB2_01530	0.78	+0.9
1,603,492	+		EFB2_01530	0.78	-0.2
1,603,492	+		EFB2_01530	0.78	-1.7
1,603,492	+		EFB2_01530	0.78	+0.3
1,603,492	+		EFB2_01530	0.78	-3.0
1,603,493	-		EFB2_01530	0.78	+2.6
1,603,493	-		EFB2_01530	0.78	-1.6
1,603,493	-		EFB2_01530	0.78	+1.2
1,603,493	-		EFB2_01530	0.78	+0.7
1,603,493	-		EFB2_01530	0.78	-2.3
1,603,493	-		EFB2_01530	0.78	-2.5
1,603,493	-		EFB2_01530	0.78	-0.0
1,603,508	+		EFB2_01530	0.80	+0.7
1,603,534	+		EFB2_01530	0.83	+0.7
1,603,674	+				-1.1
1,603,674	+				-0.8
1,603,674	+				+2.3
1,603,675	-				-1.3
1,603,675	-				-1.8
1,603,675	-				+0.6
1,603,675	-				+0.7
1,603,687	+				+0.6
1,603,687	+				+1.5
1,603,688	-				-1.8
1,603,688	-				+1.0
1,603,688	-				-0.4
1,603,690	+				+1.0
1,603,690	+				+2.1
1,603,690	+				+0.3
1,603,690	+				-0.5
1,603,691	-				-0.8
1,603,691	-				-1.1
1,603,691	-				-0.9
1,603,691	-				+1.7
1,603,691	-				-0.6
1,603,691	-				-1.5
1,603,699	+				-1.9
1,603,699	+				-1.8
1,603,699	+				+0.2
1,603,700	-				+2.2
1,603,700	-				+1.6
1,603,786	-		EFB2_01531	0.14	+0.1
1,603,786	-		EFB2_01531	0.14	+1.7
1,603,786	-		EFB2_01531	0.14	+0.3
1,603,846	+		EFB2_01531	0.21	+1.4
1,603,846	+		EFB2_01531	0.21	+1.1
1,603,870	+		EFB2_01531	0.24	-0.8
1,603,870	+		EFB2_01531	0.24	-0.6
1,603,871	-		EFB2_01531	0.24	-0.8
1,603,882	+		EFB2_01531	0.25	-0.1
1,603,882	+		EFB2_01531	0.25	+0.4
1,603,882	+		EFB2_01531	0.25	-0.7
1,603,882	+		EFB2_01531	0.25	+0.0
1,603,882	+		EFB2_01531	0.25	+1.0
1,603,882	+		EFB2_01531	0.25	+0.1
1,603,882	+		EFB2_01531	0.25	-1.7
1,603,883	-		EFB2_01531	0.26	-0.4
1,603,883	-		EFB2_01531	0.26	-0.4
1,603,883	-		EFB2_01531	0.26	-0.7
1,603,883	-		EFB2_01531	0.26	-0.5
1,603,883	-		EFB2_01531	0.26	-0.3
1,603,883	-		EFB2_01531	0.26	+1.7
1,603,883	-		EFB2_01531	0.26	+1.0
1,603,883	-		EFB2_01531	0.26	+2.0
1,603,883	-		EFB2_01531	0.26	+1.1
1,603,883	-		EFB2_01531	0.26	-1.4
1,603,886	+		EFB2_01531	0.26	+0.6
1,603,886	+		EFB2_01531	0.26	-1.8
1,603,886	+		EFB2_01531	0.26	+1.0
1,603,886	+		EFB2_01531	0.26	+0.3
1,603,886	+		EFB2_01531	0.26	-1.7
1,603,886	+		EFB2_01531	0.26	+1.2
1,603,886	+		EFB2_01531	0.26	-3.0
1,603,886	+		EFB2_01531	0.26	+0.5
1,603,887	-		EFB2_01531	0.26	+0.7
1,603,887	-		EFB2_01531	0.26	+0.7
1,603,887	-		EFB2_01531	0.26	+0.9
1,603,887	-		EFB2_01531	0.26	+0.1
1,603,887	-		EFB2_01531	0.26	+1.8
1,603,887	-		EFB2_01531	0.26	-1.4
1,603,887	-		EFB2_01531	0.26	-0.5
1,603,887	-		EFB2_01531	0.26	-0.7
1,603,892	-		EFB2_01531	0.27	-0.7
1,603,892	-		EFB2_01531	0.27	+2.3
1,603,892	-		EFB2_01531	0.27	+1.7
1,603,914	+		EFB2_01531	0.29	-0.9
1,603,914	+		EFB2_01531	0.29	+0.0
1,603,915	-		EFB2_01531	0.30	-3.5
1,603,915	-		EFB2_01531	0.30	+0.2
1,603,915	-		EFB2_01531	0.30	-1.4
1,603,982	+		EFB2_01531	0.38	+0.4
1,603,982	+		EFB2_01531	0.38	-0.0
1,603,982	+		EFB2_01531	0.38	+0.7
1,603,982	+		EFB2_01531	0.38	-1.4
1,603,983	-		EFB2_01531	0.38	+0.9
1,603,983	-		EFB2_01531	0.38	-0.2
1,603,983	-		EFB2_01531	0.38	-0.8
1,603,983	-		EFB2_01531	0.38	+0.7
1,603,983	-		EFB2_01531	0.38	+0.8
1,603,983	-		EFB2_01531	0.38	+2.3
1,603,983	-		EFB2_01531	0.38	-0.3
1,603,983	-		EFB2_01531	0.38	+2.3
1,603,983	-		EFB2_01531	0.38	-1.1
1,603,983	-		EFB2_01531	0.38	-1.5
1,604,002	-		EFB2_01531	0.40	-0.8
1,604,002	-		EFB2_01531	0.40	-0.3
1,604,018	-		EFB2_01531	0.42	+0.6
1,604,018	-		EFB2_01531	0.42	-0.3
1,604,018	-		EFB2_01531	0.42	-1.5
1,604,042	+		EFB2_01531	0.45	+1.1
1,604,042	+		EFB2_01531	0.45	+0.3
1,604,043	-		EFB2_01531	0.45	+0.7
1,604,043	-		EFB2_01531	0.45	-0.2
1,604,043	-		EFB2_01531	0.45	+0.6
1,604,093	+		EFB2_01531	0.51	-0.1
1,604,093	+		EFB2_01531	0.51	-1.6
1,604,093	+		EFB2_01531	0.51	+0.2
1,604,093	+		EFB2_01531	0.51	-3.2
1,604,093	+		EFB2_01531	0.51	+0.3
1,604,093	+		EFB2_01531	0.51	-2.0
1,604,093	+		EFB2_01531	0.51	-3.8
1,604,093	+		EFB2_01531	0.51	-1.4
1,604,093	+		EFB2_01531	0.51	-0.5
1,604,093	+		EFB2_01531	0.51	-0.2
1,604,093	+		EFB2_01531	0.51	+0.7
1,604,093	+		EFB2_01531	0.51	-1.5
1,604,093	+		EFB2_01531	0.51	+0.5
1,604,093	+		EFB2_01531	0.51	-0.4
1,604,093	+		EFB2_01531	0.51	+0.4
1,604,093	+		EFB2_01531	0.51	-2.4
1,604,093	+		EFB2_01531	0.51	+0.3
1,604,094	-		EFB2_01531	0.52	-0.8
1,604,094	-		EFB2_01531	0.52	-1.7
1,604,094	-		EFB2_01531	0.52	-0.8
1,604,094	-		EFB2_01531	0.52	+0.6
1,604,094	-		EFB2_01531	0.52	-0.3
1,604,094	-		EFB2_01531	0.52	+2.3
1,604,094	-		EFB2_01531	0.52	-1.1
1,604,094	-		EFB2_01531	0.52	-1.7
1,604,094	-		EFB2_01531	0.52	+0.3
1,604,094	-		EFB2_01531	0.52	-0.6
1,604,094	-		EFB2_01531	0.52	+0.3
1,604,094	-		EFB2_01531	0.52	+1.2
1,604,094	-		EFB2_01531	0.52	-0.8
1,604,094	-		EFB2_01531	0.52	+0.2
1,604,094	-		EFB2_01531	0.52	+0.2
1,604,094	-		EFB2_01531	0.52	-2.7
1,604,094	-		EFB2_01531	0.52	+2.3
1,604,094	-		EFB2_01531	0.52	-0.3
1,604,094	-		EFB2_01531	0.52	-3.3
1,604,094	-		EFB2_01531	0.52	-1.1
1,604,094	-		EFB2_01531	0.52	-0.5
1,604,138	+		EFB2_01531	0.57	-0.2
1,604,138	+		EFB2_01531	0.57	-0.3
1,604,139	-		EFB2_01531	0.57	+0.0
1,604,191	+		EFB2_01531	0.64	+0.9
1,604,191	+		EFB2_01531	0.64	+0.5
1,604,191	+		EFB2_01531	0.64	+2.0
1,604,238	+		EFB2_01531	0.69	-0.4
1,604,238	+		EFB2_01531	0.69	-0.3
1,604,238	+		EFB2_01531	0.69	-1.0
1,604,238	+		EFB2_01531	0.69	-1.1
1,604,238	+		EFB2_01531	0.69	-2.8
1,604,239	-		EFB2_01531	0.70	-0.9
1,604,239	-		EFB2_01531	0.70	+0.7
1,604,242	+		EFB2_01531	0.70	+1.7
1,604,243	-		EFB2_01531	0.70	-1.1
1,604,278	+		EFB2_01531	0.74	+0.7
1,604,278	+		EFB2_01531	0.74	+0.3
1,604,433	+				+0.3
1,604,433	+				-1.3
1,604,433	+				+0.0
1,604,438	+				+0.3
1,604,438	+				-3.0
1,604,438	+				+0.4
1,604,438	+				-0.8
1,604,439	-				+1.0
1,604,483	+				+0.7
1,604,483	+				+1.4
1,604,483	+				+1.3
1,604,483	+				+0.5
1,604,483	+				+1.7
1,604,483	+				-0.0
1,604,483	+				+0.4
1,604,483	+				+0.3
1,604,483	+				+1.0
1,604,483	+				+1.4
1,604,483	+				+0.9
1,604,483	+				-2.0
1,604,483	+				+0.2
1,604,483	+				-0.7
1,604,483	+				-1.2
1,604,483	+				-0.5
1,604,483	+				-0.3
1,604,483	+				-0.3
1,604,483	+				-0.8
1,604,484	-				-0.7
1,604,484	-				-1.8
1,604,484	-				-0.8
1,604,484	-				-1.6
1,604,484	-				-1.8
1,604,484	-				-0.4
1,604,484	-				+1.3
1,604,493	+				+0.1
1,604,493	+				+0.6
1,604,493	+				-0.9
1,604,493	+				-1.7
1,604,493	+				+0.3
1,604,493	+				+0.1
1,604,493	+				-1.0
1,604,493	+				+0.7
1,604,493	+				+2.3
1,604,493	+				+0.3
1,604,493	+				-0.6
1,604,493	+				-2.6
1,604,493	+				-0.5
1,604,493	+				+1.1
1,604,493	+				-1.4
1,604,493	+				+1.1
1,604,493	+				-0.4
1,604,493	+				-2.1
1,604,493	+				+0.9
1,604,493	+				-2.0
1,604,493	+				-0.8
1,604,493	+				+0.6
1,604,494	-				-1.6
1,604,494	-				+1.8
1,604,494	-				-0.8
1,604,494	-				-0.8
1,604,494	-				-0.3
1,604,494	-				-0.5
1,604,494	-				-0.3
1,604,494	-				+1.5
1,604,494	-				-1.1
1,604,494	-				+0.3
1,604,494	-				-1.5
1,604,494	-				+0.7
1,604,503	+				+1.9
1,604,503	+				+1.5
1,604,503	+				+1.1
1,604,503	+				-1.8
1,604,503	+				+1.0
1,604,504	-				+0.0
1,604,504	-				+1.3
1,604,504	-				+0.5
1,604,526	+				-0.3
1,604,530	-				-0.5
1,604,530	-				-2.2
1,604,530	-				+0.3
1,604,530	-				+0.1
1,604,551	-		EFB2_01532	0.12	-2.0
1,604,551	-		EFB2_01532	0.12	-1.3
1,604,554	-		EFB2_01532	0.13	-0.5
1,604,554	-		EFB2_01532	0.13	+1.2
1,604,565	+		EFB2_01532	0.15	-1.5
1,604,566	-		EFB2_01532	0.15	-0.5
1,604,587	+		EFB2_01532	0.19	-1.5
1,604,587	+		EFB2_01532	0.19	-0.6
1,604,587	+		EFB2_01532	0.19	-1.1
1,604,587	+		EFB2_01532	0.19	+0.9
1,604,587	+		EFB2_01532	0.19	+0.0
1,604,587	+		EFB2_01532	0.19	-0.1
1,604,587	+		EFB2_01532	0.19	-2.4
1,604,587	+		EFB2_01532	0.19	-1.0
1,604,587	+		EFB2_01532	0.19	-0.7
1,604,587	+		EFB2_01532	0.19	-1.6
1,604,587	+		EFB2_01532	0.19	-2.0
1,604,587	+		EFB2_01532	0.19	+1.3
1,604,587	+		EFB2_01532	0.19	+0.3
1,604,587	+		EFB2_01532	0.19	-1.3
1,604,587	+		EFB2_01532	0.19	-0.9
1,604,587	+		EFB2_01532	0.19	+1.0
1,604,587	+		EFB2_01532	0.19	+0.2
1,604,588	-		EFB2_01532	0.19	-2.8
1,604,588	-		EFB2_01532	0.19	-1.6
1,604,588	-		EFB2_01532	0.19	+0.1
1,604,588	-		EFB2_01532	0.19	-1.0
1,604,588	-		EFB2_01532	0.19	+1.6
1,604,588	-		EFB2_01532	0.19	-0.3
1,604,588	-		EFB2_01532	0.19	+0.6
1,604,588	-		EFB2_01532	0.19	-0.8
1,604,588	-		EFB2_01532	0.19	-1.2
1,604,588	-		EFB2_01532	0.19	-1.5
1,604,588	-		EFB2_01532	0.19	-1.0
1,604,609	+		EFB2_01532	0.23	-1.2
1,604,610	-		EFB2_01532	0.23	-2.5
1,604,610	-		EFB2_01532	0.23	-2.5
1,604,610	-		EFB2_01532	0.23	-0.8
1,604,610	-		EFB2_01532	0.23	+0.0
1,604,614	+		EFB2_01532	0.23	+0.3
1,604,614	+		EFB2_01532	0.23	+2.9
1,604,614	+		EFB2_01532	0.23	-1.5
1,604,614	+		EFB2_01532	0.23	-1.1
1,604,614	+		EFB2_01532	0.23	+0.4
1,604,614	+		EFB2_01532	0.23	+0.4
1,604,614	+		EFB2_01532	0.23	+1.1
1,604,614	+		EFB2_01532	0.23	-2.3
1,604,614	+		EFB2_01532	0.23	-0.2
1,604,614	+		EFB2_01532	0.23	-0.1
1,604,614	+		EFB2_01532	0.23	-0.4
1,604,614	+		EFB2_01532	0.23	+0.2
1,604,614	+		EFB2_01532	0.23	-1.3
1,604,615	-		EFB2_01532	0.24	-0.3
1,604,615	-		EFB2_01532	0.24	-0.3
1,604,615	-		EFB2_01532	0.24	-0.2
1,604,615	-		EFB2_01532	0.24	-0.1
1,604,615	-		EFB2_01532	0.24	-0.7
1,604,615	-		EFB2_01532	0.24	+0.1
1,604,615	-		EFB2_01532	0.24	+0.8
1,604,615	-		EFB2_01532	0.24	+2.3
1,604,615	-		EFB2_01532	0.24	-0.5
1,604,615	-		EFB2_01532	0.24	+1.6
1,604,615	-		EFB2_01532	0.24	+0.9
1,604,615	-		EFB2_01532	0.24	-1.3
1,604,617	-		EFB2_01532	0.24	+1.2
1,604,644	+		EFB2_01532	0.29	+2.0
1,604,644	+		EFB2_01532	0.29	-1.0
1,604,644	+		EFB2_01532	0.29	-1.2
1,604,644	+		EFB2_01532	0.29	+0.6
1,604,644	+		EFB2_01532	0.29	-2.4
1,604,644	+		EFB2_01532	0.29	-1.3
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