Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05312 and BACOVA_05313 are separated by 71 nucleotides BACOVA_05313 and BACOVA_05314 are separated by 121 nucleotides BACOVA_05314 and BACOVA_05315 are separated by 9 nucleotides BACOVA_05315 and BACOVA_05316 are separated by 19 nucleotides
BACOVA_05312: BACOVA_05312 - acetyltransferase, GNAT family, at 800,617 to 802,029
_05312
BACOVA_05313: BACOVA_05313 - putative beta-lactamase, at 802,101 to 802,982
_05313
BACOVA_05314: BACOVA_05314 - hypothetical protein, at 803,104 to 803,211
_05314
BACOVA_05315: BACOVA_05315 - hypothetical protein, at 803,221 to 803,523
_05315
BACOVA_05316: BACOVA_05316 - hypothetical protein, at 803,543 to 804,337
_05316
Position (kb) 802
803 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 801.139 kb on - strand, within BACOVA_05312 at 801.147 kb on - strand, within BACOVA_05312 at 801.204 kb on + strand, within BACOVA_05312 at 801.275 kb on + strand, within BACOVA_05312 at 801.275 kb on + strand, within BACOVA_05312 at 801.276 kb on - strand, within BACOVA_05312 at 801.385 kb on - strand, within BACOVA_05312 at 801.385 kb on - strand, within BACOVA_05312 at 801.392 kb on - strand, within BACOVA_05312 at 801.392 kb on - strand, within BACOVA_05312 at 801.406 kb on + strand, within BACOVA_05312 at 801.407 kb on - strand, within BACOVA_05312 at 801.423 kb on + strand, within BACOVA_05312 at 801.423 kb on + strand, within BACOVA_05312 at 801.424 kb on - strand, within BACOVA_05312 at 801.424 kb on - strand, within BACOVA_05312 at 801.462 kb on + strand, within BACOVA_05312 at 801.591 kb on + strand, within BACOVA_05312 at 801.591 kb on + strand, within BACOVA_05312 at 801.592 kb on - strand, within BACOVA_05312 at 801.594 kb on + strand, within BACOVA_05312 at 801.598 kb on + strand, within BACOVA_05312 at 801.689 kb on - strand, within BACOVA_05312 at 801.702 kb on - strand, within BACOVA_05312 at 801.717 kb on + strand, within BACOVA_05312 at 801.738 kb on + strand, within BACOVA_05312 at 801.738 kb on + strand, within BACOVA_05312 at 801.739 kb on - strand, within BACOVA_05312 at 801.850 kb on + strand, within BACOVA_05312 at 801.851 kb on - strand, within BACOVA_05312 at 801.856 kb on + strand, within BACOVA_05312 at 801.856 kb on + strand, within BACOVA_05312 at 801.856 kb on + strand, within BACOVA_05312 at 801.857 kb on - strand, within BACOVA_05312 at 801.858 kb on + strand, within BACOVA_05312 at 801.858 kb on + strand, within BACOVA_05312 at 801.901 kb on - strand at 801.905 kb on + strand at 801.906 kb on - strand at 801.971 kb on + strand at 801.971 kb on + strand at 801.971 kb on + strand at 801.971 kb on + strand at 801.972 kb on - strand at 802.044 kb on + strand at 802.052 kb on - strand at 802.097 kb on + strand at 802.102 kb on + strand at 802.113 kb on + strand at 802.114 kb on - strand at 802.114 kb on - strand at 802.114 kb on - strand at 802.148 kb on + strand at 802.154 kb on + strand at 802.155 kb on - strand at 802.169 kb on + strand at 802.170 kb on - strand at 802.200 kb on + strand, within BACOVA_05313 at 802.200 kb on + strand, within BACOVA_05313 at 802.202 kb on + strand, within BACOVA_05313 at 802.203 kb on - strand, within BACOVA_05313 at 802.205 kb on + strand, within BACOVA_05313 at 802.205 kb on + strand, within BACOVA_05313 at 802.205 kb on + strand, within BACOVA_05313 at 802.206 kb on - strand, within BACOVA_05313 at 802.206 kb on - strand, within BACOVA_05313 at 802.207 kb on + strand, within BACOVA_05313 at 802.208 kb on - strand, within BACOVA_05313 at 802.212 kb on - strand, within BACOVA_05313 at 802.248 kb on - strand, within BACOVA_05313 at 802.248 kb on - strand, within BACOVA_05313 at 802.275 kb on - strand, within BACOVA_05313 at 802.302 kb on + strand, within BACOVA_05313 at 802.377 kb on + strand, within BACOVA_05313 at 802.390 kb on + strand, within BACOVA_05313 at 802.473 kb on + strand, within BACOVA_05313 at 802.534 kb on - strand, within BACOVA_05313 at 802.544 kb on + strand, within BACOVA_05313 at 802.546 kb on + strand, within BACOVA_05313 at 802.547 kb on - strand, within BACOVA_05313 at 802.555 kb on - strand, within BACOVA_05313 at 802.673 kb on + strand, within BACOVA_05313 at 802.674 kb on - strand, within BACOVA_05313 at 802.691 kb on - strand, within BACOVA_05313 at 802.691 kb on - strand, within BACOVA_05313 at 802.694 kb on + strand, within BACOVA_05313 at 802.760 kb on + strand, within BACOVA_05313 at 802.762 kb on + strand, within BACOVA_05313 at 802.798 kb on - strand, within BACOVA_05313 at 802.821 kb on - strand, within BACOVA_05313 at 802.826 kb on + strand, within BACOVA_05313 at 802.837 kb on - strand, within BACOVA_05313 at 802.841 kb on + strand, within BACOVA_05313 at 802.866 kb on + strand, within BACOVA_05313 at 802.867 kb on - strand, within BACOVA_05313 at 802.872 kb on + strand, within BACOVA_05313 at 802.872 kb on + strand, within BACOVA_05313 at 802.873 kb on - strand, within BACOVA_05313 at 802.954 kb on - strand at 802.966 kb on - strand at 802.968 kb on + strand at 803.028 kb on + strand at 803.054 kb on + strand at 803.055 kb on - strand at 803.055 kb on - strand at 803.055 kb on - strand at 803.059 kb on - strand at 803.059 kb on - strand at 803.059 kb on - strand at 803.092 kb on + strand at 803.093 kb on - strand at 803.100 kb on + strand at 803.100 kb on + strand at 803.100 kb on + strand at 803.100 kb on + strand at 803.112 kb on + strand at 803.113 kb on - strand at 803.141 kb on + strand, within BACOVA_05314 at 803.166 kb on + strand, within BACOVA_05314 at 803.171 kb on - strand, within BACOVA_05314 at 803.182 kb on + strand, within BACOVA_05314 at 803.199 kb on + strand, within BACOVA_05314 at 803.200 kb on - strand, within BACOVA_05314 at 803.200 kb on - strand, within BACOVA_05314 at 803.200 kb on - strand, within BACOVA_05314 at 803.201 kb on + strand at 803.220 kb on + strand at 803.220 kb on + strand at 803.227 kb on - strand at 803.227 kb on - strand at 803.257 kb on + strand, within BACOVA_05315 at 803.257 kb on + strand, within BACOVA_05315 at 803.258 kb on - strand, within BACOVA_05315 at 803.259 kb on + strand, within BACOVA_05315 at 803.285 kb on - strand, within BACOVA_05315 at 803.288 kb on - strand, within BACOVA_05315 at 803.328 kb on + strand, within BACOVA_05315 at 803.328 kb on + strand, within BACOVA_05315 at 803.406 kb on + strand, within BACOVA_05315 at 803.419 kb on - strand, within BACOVA_05315 at 803.426 kb on + strand, within BACOVA_05315 at 803.427 kb on - strand, within BACOVA_05315 at 803.427 kb on - strand, within BACOVA_05315 at 803.439 kb on + strand, within BACOVA_05315 at 803.464 kb on - strand, within BACOVA_05315 at 803.564 kb on + strand at 803.565 kb on - strand at 803.565 kb on - strand at 803.579 kb on + strand at 803.587 kb on - strand at 803.596 kb on + strand at 803.596 kb on + strand at 803.596 kb on + strand at 803.596 kb on + strand at 803.596 kb on + strand at 803.596 kb on + strand at 803.599 kb on + strand at 803.617 kb on + strand at 803.618 kb on - strand at 803.636 kb on + strand, within BACOVA_05316 at 803.636 kb on + strand, within BACOVA_05316 at 803.636 kb on + strand, within BACOVA_05316 at 803.637 kb on - strand, within BACOVA_05316 at 803.642 kb on - strand, within BACOVA_05316 at 803.705 kb on - strand, within BACOVA_05316 at 803.708 kb on + strand, within BACOVA_05316 at 803.709 kb on - strand, within BACOVA_05316 at 803.752 kb on + strand, within BACOVA_05316 at 803.758 kb on - strand, within BACOVA_05316 at 803.764 kb on + strand, within BACOVA_05316 at 803.765 kb on - strand, within BACOVA_05316 at 803.765 kb on - strand, within BACOVA_05316 at 803.765 kb on - strand, within BACOVA_05316 at 803.771 kb on - strand, within BACOVA_05316 at 803.775 kb on + strand, within BACOVA_05316 at 803.776 kb on - strand, within BACOVA_05316 at 803.776 kb on - strand, within BACOVA_05316 at 803.817 kb on + strand, within BACOVA_05316 at 803.817 kb on + strand, within BACOVA_05316 at 803.820 kb on + strand, within BACOVA_05316 at 803.820 kb on + strand, within BACOVA_05316 at 803.851 kb on + strand, within BACOVA_05316 at 803.851 kb on + strand, within BACOVA_05316 at 803.852 kb on - strand, within BACOVA_05316 at 803.875 kb on + strand, within BACOVA_05316 at 803.876 kb on - strand, within BACOVA_05316 at 803.928 kb on + strand, within BACOVA_05316 at 803.930 kb on + strand, within BACOVA_05316 at 803.931 kb on - strand, within BACOVA_05316 at 803.931 kb on - strand, within BACOVA_05316 at 803.931 kb on - strand, within BACOVA_05316 at 803.970 kb on - strand, within BACOVA_05316
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C) remove 801,139 - BACOVA_05312 0.37 +0.4 801,147 - BACOVA_05312 0.38 -2.1 801,204 + BACOVA_05312 0.42 -0.9 801,275 + BACOVA_05312 0.47 +0.7 801,275 + BACOVA_05312 0.47 +0.6 801,276 - BACOVA_05312 0.47 +1.1 801,385 - BACOVA_05312 0.54 +1.4 801,385 - BACOVA_05312 0.54 -2.6 801,392 - BACOVA_05312 0.55 -0.3 801,392 - BACOVA_05312 0.55 +1.1 801,406 + BACOVA_05312 0.56 -0.2 801,407 - BACOVA_05312 0.56 +0.2 801,423 + BACOVA_05312 0.57 +0.9 801,423 + BACOVA_05312 0.57 +1.5 801,424 - BACOVA_05312 0.57 +0.5 801,424 - BACOVA_05312 0.57 +0.7 801,462 + BACOVA_05312 0.60 -0.3 801,591 + BACOVA_05312 0.69 +0.4 801,591 + BACOVA_05312 0.69 -0.8 801,592 - BACOVA_05312 0.69 +0.3 801,594 + BACOVA_05312 0.69 +0.6 801,598 + BACOVA_05312 0.69 +0.2 801,689 - BACOVA_05312 0.76 +0.5 801,702 - BACOVA_05312 0.77 -3.5 801,717 + BACOVA_05312 0.78 +0.8 801,738 + BACOVA_05312 0.79 -0.9 801,738 + BACOVA_05312 0.79 +0.0 801,739 - BACOVA_05312 0.79 +0.5 801,850 + BACOVA_05312 0.87 +0.8 801,851 - BACOVA_05312 0.87 +0.0 801,856 + BACOVA_05312 0.88 +0.5 801,856 + BACOVA_05312 0.88 +0.4 801,856 + BACOVA_05312 0.88 -0.1 801,857 - BACOVA_05312 0.88 -1.0 801,858 + BACOVA_05312 0.88 +0.3 801,858 + BACOVA_05312 0.88 -1.4 801,901 - -0.7 801,905 + -0.7 801,906 - +0.1 801,971 + +1.1 801,971 + +0.1 801,971 + +0.1 801,971 + -0.4 801,972 - -0.5 802,044 + +1.9 802,052 - -2.1 802,097 + -2.0 802,102 + +1.7 802,113 + -0.2 802,114 - -0.2 802,114 - +0.1 802,114 - +0.6 802,148 + -0.5 802,154 + +0.9 802,155 - +0.2 802,169 + +0.7 802,170 - -0.8 802,200 + BACOVA_05313 0.11 -0.9 802,200 + BACOVA_05313 0.11 -0.6 802,202 + BACOVA_05313 0.11 -1.2 802,203 - BACOVA_05313 0.12 +1.8 802,205 + BACOVA_05313 0.12 -0.3 802,205 + BACOVA_05313 0.12 -0.3 802,205 + BACOVA_05313 0.12 -0.1 802,206 - BACOVA_05313 0.12 +0.9 802,206 - BACOVA_05313 0.12 +0.2 802,207 + BACOVA_05313 0.12 -0.9 802,208 - BACOVA_05313 0.12 +0.3 802,212 - BACOVA_05313 0.13 +1.4 802,248 - BACOVA_05313 0.17 -0.5 802,248 - BACOVA_05313 0.17 +0.4 802,275 - BACOVA_05313 0.20 +0.1 802,302 + BACOVA_05313 0.23 +1.0 802,377 + BACOVA_05313 0.31 +1.1 802,390 + BACOVA_05313 0.33 +0.5 802,473 + BACOVA_05313 0.42 +0.1 802,534 - BACOVA_05313 0.49 -0.2 802,544 + BACOVA_05313 0.50 +0.2 802,546 + BACOVA_05313 0.50 +0.8 802,547 - BACOVA_05313 0.51 +1.3 802,555 - BACOVA_05313 0.51 +0.2 802,673 + BACOVA_05313 0.65 -1.2 802,674 - BACOVA_05313 0.65 +0.8 802,691 - BACOVA_05313 0.67 -1.0 802,691 - BACOVA_05313 0.67 +0.3 802,694 + BACOVA_05313 0.67 -0.4 802,760 + BACOVA_05313 0.75 +0.1 802,762 + BACOVA_05313 0.75 +0.9 802,798 - BACOVA_05313 0.79 +0.5 802,821 - BACOVA_05313 0.82 +0.5 802,826 + BACOVA_05313 0.82 -1.0 802,837 - BACOVA_05313 0.83 +1.3 802,841 + BACOVA_05313 0.84 +2.1 802,866 + BACOVA_05313 0.87 +0.4 802,867 - BACOVA_05313 0.87 -1.2 802,872 + BACOVA_05313 0.87 -1.1 802,872 + BACOVA_05313 0.87 -2.2 802,873 - BACOVA_05313 0.88 -0.2 802,954 - +0.7 802,966 - -0.4 802,968 + +0.3 803,028 + -0.1 803,054 + -1.7 803,055 - -0.5 803,055 - +0.5 803,055 - -0.2 803,059 - -0.2 803,059 - +1.0 803,059 - -0.5 803,092 + +0.7 803,093 - -1.1 803,100 + -0.4 803,100 + -0.6 803,100 + +0.2 803,100 + +1.7 803,112 + -0.3 803,113 - +0.7 803,141 + BACOVA_05314 0.34 -0.7 803,166 + BACOVA_05314 0.57 -0.9 803,171 - BACOVA_05314 0.62 -1.2 803,182 + BACOVA_05314 0.72 -0.1 803,199 + BACOVA_05314 0.88 -0.7 803,200 - BACOVA_05314 0.89 -0.9 803,200 - BACOVA_05314 0.89 +0.4 803,200 - BACOVA_05314 0.89 +0.5 803,201 + +0.6 803,220 + -0.7 803,220 + -0.6 803,227 - -0.2 803,227 - +0.8 803,257 + BACOVA_05315 0.12 -0.3 803,257 + BACOVA_05315 0.12 +0.9 803,258 - BACOVA_05315 0.12 +0.7 803,259 + BACOVA_05315 0.13 +0.1 803,285 - BACOVA_05315 0.21 +0.7 803,288 - BACOVA_05315 0.22 +0.8 803,328 + BACOVA_05315 0.35 -1.1 803,328 + BACOVA_05315 0.35 +0.8 803,406 + BACOVA_05315 0.61 +0.5 803,419 - BACOVA_05315 0.65 -1.0 803,426 + BACOVA_05315 0.68 +1.0 803,427 - BACOVA_05315 0.68 -0.5 803,427 - BACOVA_05315 0.68 +0.5 803,439 + BACOVA_05315 0.72 +0.5 803,464 - BACOVA_05315 0.80 +1.1 803,564 + +2.4 803,565 - +1.7 803,565 - +1.1 803,579 + +1.6 803,587 - -3.0 803,596 + +0.5 803,596 + +0.4 803,596 + -0.6 803,596 + -0.6 803,596 + -0.4 803,596 + -0.5 803,599 + -0.4 803,617 + -1.0 803,618 - -0.3 803,636 + BACOVA_05316 0.12 +1.2 803,636 + BACOVA_05316 0.12 -0.7 803,636 + BACOVA_05316 0.12 -1.5 803,637 - BACOVA_05316 0.12 -0.6 803,642 - BACOVA_05316 0.12 -0.6 803,705 - BACOVA_05316 0.20 -1.2 803,708 + BACOVA_05316 0.21 -1.3 803,709 - BACOVA_05316 0.21 +0.5 803,752 + BACOVA_05316 0.26 +0.6 803,758 - BACOVA_05316 0.27 +1.0 803,764 + BACOVA_05316 0.28 -1.5 803,765 - BACOVA_05316 0.28 -0.3 803,765 - BACOVA_05316 0.28 +0.9 803,765 - BACOVA_05316 0.28 +0.5 803,771 - BACOVA_05316 0.29 -0.3 803,775 + BACOVA_05316 0.29 -0.9 803,776 - BACOVA_05316 0.29 +1.4 803,776 - BACOVA_05316 0.29 -1.6 803,817 + BACOVA_05316 0.34 -0.8 803,817 + BACOVA_05316 0.34 +0.1 803,820 + BACOVA_05316 0.35 -0.2 803,820 + BACOVA_05316 0.35 -2.2 803,851 + BACOVA_05316 0.39 +0.2 803,851 + BACOVA_05316 0.39 -0.0 803,852 - BACOVA_05316 0.39 -0.7 803,875 + BACOVA_05316 0.42 -0.4 803,876 - BACOVA_05316 0.42 +1.1 803,928 + BACOVA_05316 0.48 -1.9 803,930 + BACOVA_05316 0.49 +0.9 803,931 - BACOVA_05316 0.49 +0.8 803,931 - BACOVA_05316 0.49 +0.2 803,931 - BACOVA_05316 0.49 -0.0 803,970 - BACOVA_05316 0.54 -1.1
Or see this region's nucleotide sequence