Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03746

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03745 and BACOVA_03746 are separated by 366 nucleotidesBACOVA_03746 and BACOVA_03747 are separated by 351 nucleotides BACOVA_03745: BACOVA_03745 - glycosyltransferase, group 4 family, at 74,880 to 75,692 _03745 BACOVA_03746: BACOVA_03746 - transcription termination/antitermination factor NusG, at 76,059 to 76,640 _03746 BACOVA_03747: BACOVA_03747 - site-specific recombinase, phage integrase family, at 76,992 to 77,708 _03747 Position (kb) 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 75.065 kb on + strand, within BACOVA_03745at 75.104 kb on + strand, within BACOVA_03745at 75.141 kb on + strand, within BACOVA_03745at 75.148 kb on - strand, within BACOVA_03745at 75.181 kb on - strand, within BACOVA_03745at 75.189 kb on - strand, within BACOVA_03745at 75.225 kb on + strand, within BACOVA_03745at 75.270 kb on + strand, within BACOVA_03745at 75.270 kb on + strand, within BACOVA_03745at 75.272 kb on + strand, within BACOVA_03745at 75.273 kb on - strand, within BACOVA_03745at 75.273 kb on - strand, within BACOVA_03745at 75.275 kb on - strand, within BACOVA_03745at 75.305 kb on + strand, within BACOVA_03745at 75.344 kb on + strand, within BACOVA_03745at 75.363 kb on + strand, within BACOVA_03745at 75.363 kb on + strand, within BACOVA_03745at 75.364 kb on - strand, within BACOVA_03745at 75.373 kb on - strand, within BACOVA_03745at 75.392 kb on + strand, within BACOVA_03745at 75.392 kb on + strand, within BACOVA_03745at 75.392 kb on + strand, within BACOVA_03745at 75.393 kb on - strand, within BACOVA_03745at 75.397 kb on + strand, within BACOVA_03745at 75.398 kb on - strand, within BACOVA_03745at 75.418 kb on - strand, within BACOVA_03745at 75.419 kb on + strand, within BACOVA_03745at 75.469 kb on - strand, within BACOVA_03745at 75.503 kb on + strand, within BACOVA_03745at 75.503 kb on + strand, within BACOVA_03745at 75.503 kb on + strand, within BACOVA_03745at 75.503 kb on + strand, within BACOVA_03745at 75.525 kb on + strand, within BACOVA_03745at 75.525 kb on + strand, within BACOVA_03745at 75.526 kb on - strand, within BACOVA_03745at 75.526 kb on - strand, within BACOVA_03745at 75.527 kb on + strand, within BACOVA_03745at 75.528 kb on - strand, within BACOVA_03745at 75.562 kb on + strand, within BACOVA_03745at 75.562 kb on + strand, within BACOVA_03745at 75.563 kb on - strand, within BACOVA_03745at 75.563 kb on - strand, within BACOVA_03745at 75.581 kb on - strand, within BACOVA_03745at 75.582 kb on + strand, within BACOVA_03745at 75.582 kb on + strand, within BACOVA_03745at 75.583 kb on - strand, within BACOVA_03745at 75.583 kb on - strand, within BACOVA_03745at 75.669 kb on - strandat 75.694 kb on + strandat 75.766 kb on + strandat 75.767 kb on - strandat 75.778 kb on - strandat 75.782 kb on + strandat 75.782 kb on + strandat 75.863 kb on + strandat 75.889 kb on + strandat 75.903 kb on - strandat 75.919 kb on - strandat 75.947 kb on + strandat 75.977 kb on + strandat 76.050 kb on - strandat 76.151 kb on + strand, within BACOVA_03746at 76.152 kb on - strand, within BACOVA_03746at 76.346 kb on + strand, within BACOVA_03746at 76.346 kb on + strand, within BACOVA_03746at 76.346 kb on + strand, within BACOVA_03746at 76.404 kb on + strand, within BACOVA_03746at 76.405 kb on - strand, within BACOVA_03746at 76.677 kb on + strandat 76.678 kb on - strandat 76.694 kb on + strandat 76.746 kb on + strandat 76.767 kb on - strandat 76.767 kb on - strandat 76.767 kb on - strandat 76.774 kb on + strandat 76.785 kb on + strandat 76.803 kb on + strandat 76.804 kb on - strandat 76.849 kb on + strandat 76.889 kb on + strandat 77.094 kb on - strand, within BACOVA_03747at 77.094 kb on - strand, within BACOVA_03747at 77.102 kb on + strand, within BACOVA_03747at 77.136 kb on + strand, within BACOVA_03747at 77.136 kb on + strand, within BACOVA_03747at 77.136 kb on + strand, within BACOVA_03747at 77.146 kb on + strand, within BACOVA_03747at 77.146 kb on + strand, within BACOVA_03747at 77.147 kb on - strand, within BACOVA_03747at 77.180 kb on + strand, within BACOVA_03747at 77.180 kb on + strand, within BACOVA_03747at 77.209 kb on - strand, within BACOVA_03747at 77.220 kb on + strand, within BACOVA_03747at 77.263 kb on + strand, within BACOVA_03747at 77.270 kb on + strand, within BACOVA_03747at 77.271 kb on - strand, within BACOVA_03747at 77.273 kb on - strand, within BACOVA_03747at 77.308 kb on - strand, within BACOVA_03747at 77.310 kb on + strand, within BACOVA_03747at 77.357 kb on + strand, within BACOVA_03747at 77.360 kb on + strand, within BACOVA_03747at 77.361 kb on - strand, within BACOVA_03747at 77.361 kb on - strand, within BACOVA_03747at 77.379 kb on - strand, within BACOVA_03747at 77.403 kb on + strand, within BACOVA_03747at 77.403 kb on + strand, within BACOVA_03747at 77.406 kb on - strand, within BACOVA_03747at 77.438 kb on - strand, within BACOVA_03747at 77.446 kb on - strand, within BACOVA_03747at 77.514 kb on + strand, within BACOVA_03747at 77.570 kb on - strand, within BACOVA_03747at 77.570 kb on - strand, within BACOVA_03747at 77.595 kb on - strand, within BACOVA_03747at 77.619 kb on + strand, within BACOVA_03747at 77.619 kb on - strand, within BACOVA_03747at 77.619 kb on - strand, within BACOVA_03747at 77.622 kb on + strand, within BACOVA_03747at 77.623 kb on - strand, within BACOVA_03747

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
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75,065 + BACOVA_03745 0.23 +0.1
75,104 + BACOVA_03745 0.28 +1.3
75,141 + BACOVA_03745 0.32 -2.8
75,148 - BACOVA_03745 0.33 -1.2
75,181 - BACOVA_03745 0.37 -2.5
75,189 - BACOVA_03745 0.38 -0.4
75,225 + BACOVA_03745 0.42 -0.2
75,270 + BACOVA_03745 0.48 +0.9
75,270 + BACOVA_03745 0.48 +0.9
75,272 + BACOVA_03745 0.48 -0.4
75,273 - BACOVA_03745 0.48 -1.4
75,273 - BACOVA_03745 0.48 -1.4
75,275 - BACOVA_03745 0.49 -1.4
75,305 + BACOVA_03745 0.52 -0.1
75,344 + BACOVA_03745 0.57 -0.1
75,363 + BACOVA_03745 0.59 +0.2
75,363 + BACOVA_03745 0.59 +1.3
75,364 - BACOVA_03745 0.60 -0.3
75,373 - BACOVA_03745 0.61 -0.4
75,392 + BACOVA_03745 0.63 -0.2
75,392 + BACOVA_03745 0.63 -2.2
75,392 + BACOVA_03745 0.63 +0.1
75,393 - BACOVA_03745 0.63 -0.4
75,397 + BACOVA_03745 0.64 -0.8
75,398 - BACOVA_03745 0.64 -2.3
75,418 - BACOVA_03745 0.66 -0.8
75,419 + BACOVA_03745 0.66 +0.2
75,469 - BACOVA_03745 0.72 -1.7
75,503 + BACOVA_03745 0.77 +0.3
75,503 + BACOVA_03745 0.77 +0.3
75,503 + BACOVA_03745 0.77 +0.8
75,503 + BACOVA_03745 0.77 -0.7
75,525 + BACOVA_03745 0.79 +0.3
75,525 + BACOVA_03745 0.79 +0.3
75,526 - BACOVA_03745 0.79 -0.9
75,526 - BACOVA_03745 0.79 -0.2
75,527 + BACOVA_03745 0.80 +0.3
75,528 - BACOVA_03745 0.80 -2.0
75,562 + BACOVA_03745 0.84 -0.3
75,562 + BACOVA_03745 0.84 +0.5
75,563 - BACOVA_03745 0.84 +0.1
75,563 - BACOVA_03745 0.84 -0.5
75,581 - BACOVA_03745 0.86 -0.1
75,582 + BACOVA_03745 0.86 -0.4
75,582 + BACOVA_03745 0.86 -0.9
75,583 - BACOVA_03745 0.86 -0.9
75,583 - BACOVA_03745 0.86 -0.7
75,669 - +0.2
75,694 + -1.0
75,766 + +0.5
75,767 - -2.6
75,778 - -0.1
75,782 + -0.6
75,782 + -2.7
75,863 + +1.3
75,889 + -0.1
75,903 - -0.2
75,919 - +0.9
75,947 + -1.2
75,977 + +0.4
76,050 - -0.1
76,151 + BACOVA_03746 0.16 -0.0
76,152 - BACOVA_03746 0.16 -1.7
76,346 + BACOVA_03746 0.49 -1.8
76,346 + BACOVA_03746 0.49 -0.1
76,346 + BACOVA_03746 0.49 -0.2
76,404 + BACOVA_03746 0.59 -0.5
76,405 - BACOVA_03746 0.59 -0.8
76,677 + -0.5
76,678 - +1.3
76,694 + -0.9
76,746 + -0.7
76,767 - -0.7
76,767 - -1.2
76,767 - -0.8
76,774 + -1.6
76,785 + -0.1
76,803 + -0.3
76,804 - +0.9
76,849 + +0.3
76,889 + +1.0
77,094 - BACOVA_03747 0.14 +0.3
77,094 - BACOVA_03747 0.14 -0.1
77,102 + BACOVA_03747 0.15 +1.8
77,136 + BACOVA_03747 0.20 -1.2
77,136 + BACOVA_03747 0.20 -0.4
77,136 + BACOVA_03747 0.20 +1.2
77,146 + BACOVA_03747 0.21 -1.9
77,146 + BACOVA_03747 0.21 -2.4
77,147 - BACOVA_03747 0.22 +0.2
77,180 + BACOVA_03747 0.26 -1.2
77,180 + BACOVA_03747 0.26 -0.4
77,209 - BACOVA_03747 0.30 +0.2
77,220 + BACOVA_03747 0.32 +0.7
77,263 + BACOVA_03747 0.38 +0.1
77,270 + BACOVA_03747 0.39 +0.4
77,271 - BACOVA_03747 0.39 -1.4
77,273 - BACOVA_03747 0.39 +1.4
77,308 - BACOVA_03747 0.44 +1.2
77,310 + BACOVA_03747 0.44 -0.1
77,357 + BACOVA_03747 0.51 -2.1
77,360 + BACOVA_03747 0.51 -0.4
77,361 - BACOVA_03747 0.51 +0.2
77,361 - BACOVA_03747 0.51 -2.2
77,379 - BACOVA_03747 0.54 +0.0
77,403 + BACOVA_03747 0.57 -1.6
77,403 + BACOVA_03747 0.57 -0.1
77,406 - BACOVA_03747 0.58 -2.0
77,438 - BACOVA_03747 0.62 +0.4
77,446 - BACOVA_03747 0.63 +0.0
77,514 + BACOVA_03747 0.73 -0.9
77,570 - BACOVA_03747 0.81 -0.2
77,570 - BACOVA_03747 0.81 +1.7
77,595 - BACOVA_03747 0.84 -0.1
77,619 + BACOVA_03747 0.87 +0.1
77,619 - BACOVA_03747 0.87 -0.6
77,619 - BACOVA_03747 0.87 -0.4
77,622 + BACOVA_03747 0.88 -0.1
77,623 - BACOVA_03747 0.88 -1.3

Or see this region's nucleotide sequence