Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03500

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03499 and BACOVA_03500 are separated by 39 nucleotidesBACOVA_03500 and BACOVA_03501 are separated by 101 nucleotides BACOVA_03499: BACOVA_03499 - phosphate acetyltransferase, at 256,480 to 257,499 _03499 BACOVA_03500: BACOVA_03500 - acetate kinase, at 257,539 to 258,738 _03500 BACOVA_03501: BACOVA_03501 - glycosyltransferase, group 2 family protein, at 258,840 to 259,829 _03501 Position (kb) 257 258 259Strain fitness (log2 ratio) -1 0 1at 257.504 kb on + strandat 257.504 kb on + strandat 257.504 kb on + strandat 257.510 kb on + strandat 257.515 kb on + strandat 257.524 kb on + strandat 258.723 kb on + strandat 258.733 kb on - strandat 258.750 kb on + strandat 258.757 kb on - strandat 258.819 kb on + strandat 258.823 kb on + strandat 258.823 kb on + strandat 258.846 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
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257,504 + +0.4
257,504 + -1.4
257,504 + -0.8
257,510 + -0.3
257,515 + -0.3
257,524 + -1.1
258,723 + +0.3
258,733 - -1.1
258,750 + +0.2
258,757 - +0.7
258,819 + -0.2
258,823 + -0.7
258,823 + +0.8
258,846 + -1.3

Or see this region's nucleotide sequence