Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03494

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03493 and BACOVA_03494 overlap by 35 nucleotidesBACOVA_03494 and BACOVA_03495 are separated by 91 nucleotides BACOVA_03493: BACOVA_03493 - hypothetical protein, at 250,619 to 251,914 _03493 BACOVA_03494: BACOVA_03494 - glycosyl hydrolase, family 88, at 251,880 to 253,052 _03494 BACOVA_03495: BACOVA_03495 - acetyltransferase, GNAT family, at 253,144 to 254,160 _03495 Position (kb) 251 252 253 254Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 250.891 kb on + strand, within BACOVA_03493at 250.894 kb on - strand, within BACOVA_03493at 250.909 kb on - strand, within BACOVA_03493at 250.923 kb on - strand, within BACOVA_03493at 250.924 kb on + strand, within BACOVA_03493at 250.924 kb on + strand, within BACOVA_03493at 250.926 kb on + strand, within BACOVA_03493at 250.926 kb on + strand, within BACOVA_03493at 250.926 kb on + strand, within BACOVA_03493at 250.926 kb on + strand, within BACOVA_03493at 250.927 kb on - strand, within BACOVA_03493at 250.927 kb on - strand, within BACOVA_03493at 250.927 kb on - strand, within BACOVA_03493at 250.927 kb on - strand, within BACOVA_03493at 250.932 kb on + strand, within BACOVA_03493at 250.961 kb on - strand, within BACOVA_03493at 251.058 kb on - strand, within BACOVA_03493at 251.079 kb on + strand, within BACOVA_03493at 251.079 kb on + strand, within BACOVA_03493at 251.080 kb on - strand, within BACOVA_03493at 251.175 kb on + strand, within BACOVA_03493at 251.175 kb on + strand, within BACOVA_03493at 251.176 kb on - strand, within BACOVA_03493at 251.195 kb on - strand, within BACOVA_03493at 251.208 kb on - strand, within BACOVA_03493at 251.219 kb on + strand, within BACOVA_03493at 251.293 kb on + strand, within BACOVA_03493at 251.335 kb on + strand, within BACOVA_03493at 251.387 kb on + strand, within BACOVA_03493at 251.387 kb on + strand, within BACOVA_03493at 251.388 kb on - strand, within BACOVA_03493at 251.434 kb on + strand, within BACOVA_03493at 251.463 kb on - strand, within BACOVA_03493at 251.465 kb on - strand, within BACOVA_03493at 251.466 kb on + strand, within BACOVA_03493at 251.466 kb on + strand, within BACOVA_03493at 251.467 kb on - strand, within BACOVA_03493at 251.467 kb on - strand, within BACOVA_03493at 251.471 kb on - strand, within BACOVA_03493at 251.471 kb on - strand, within BACOVA_03493at 251.475 kb on - strand, within BACOVA_03493at 251.553 kb on + strand, within BACOVA_03493at 251.575 kb on + strand, within BACOVA_03493at 251.608 kb on + strand, within BACOVA_03493at 251.609 kb on - strand, within BACOVA_03493at 251.654 kb on - strand, within BACOVA_03493at 251.719 kb on + strand, within BACOVA_03493at 251.820 kb on + strandat 251.880 kb on - strandat 251.896 kb on + strandat 251.903 kb on - strandat 251.908 kb on + strandat 251.909 kb on - strandat 251.909 kb on - strandat 251.912 kb on + strandat 251.918 kb on + strandat 251.929 kb on + strandat 251.929 kb on + strandat 251.930 kb on - strandat 251.932 kb on - strandat 252.019 kb on + strand, within BACOVA_03494at 252.033 kb on - strand, within BACOVA_03494at 252.042 kb on - strand, within BACOVA_03494at 252.046 kb on - strand, within BACOVA_03494at 252.100 kb on - strand, within BACOVA_03494at 252.113 kb on + strand, within BACOVA_03494at 252.124 kb on - strand, within BACOVA_03494at 252.179 kb on + strand, within BACOVA_03494at 252.179 kb on + strand, within BACOVA_03494at 252.179 kb on + strand, within BACOVA_03494at 252.180 kb on - strand, within BACOVA_03494at 252.180 kb on - strand, within BACOVA_03494at 252.225 kb on + strand, within BACOVA_03494at 252.231 kb on + strand, within BACOVA_03494at 252.232 kb on - strand, within BACOVA_03494at 252.249 kb on + strand, within BACOVA_03494at 252.250 kb on - strand, within BACOVA_03494at 252.250 kb on - strand, within BACOVA_03494at 252.288 kb on + strand, within BACOVA_03494at 252.288 kb on + strand, within BACOVA_03494at 252.301 kb on - strand, within BACOVA_03494at 252.302 kb on + strand, within BACOVA_03494at 252.355 kb on - strand, within BACOVA_03494at 252.403 kb on + strand, within BACOVA_03494at 252.403 kb on + strand, within BACOVA_03494at 252.404 kb on - strand, within BACOVA_03494at 252.406 kb on - strand, within BACOVA_03494at 252.406 kb on - strand, within BACOVA_03494at 252.407 kb on + strand, within BACOVA_03494at 252.407 kb on + strand, within BACOVA_03494at 252.435 kb on + strand, within BACOVA_03494at 252.436 kb on - strand, within BACOVA_03494at 252.438 kb on - strand, within BACOVA_03494at 252.480 kb on + strand, within BACOVA_03494at 252.480 kb on + strand, within BACOVA_03494at 252.480 kb on + strand, within BACOVA_03494at 252.489 kb on + strand, within BACOVA_03494at 252.500 kb on + strand, within BACOVA_03494at 252.500 kb on + strand, within BACOVA_03494at 252.501 kb on - strand, within BACOVA_03494at 252.501 kb on - strand, within BACOVA_03494at 252.501 kb on - strand, within BACOVA_03494at 252.504 kb on - strand, within BACOVA_03494at 252.504 kb on - strand, within BACOVA_03494at 252.504 kb on - strand, within BACOVA_03494at 252.504 kb on - strand, within BACOVA_03494at 252.504 kb on - strand, within BACOVA_03494at 252.507 kb on + strand, within BACOVA_03494at 252.507 kb on + strand, within BACOVA_03494at 252.552 kb on + strand, within BACOVA_03494at 252.552 kb on + strand, within BACOVA_03494at 252.553 kb on - strand, within BACOVA_03494at 252.553 kb on - strand, within BACOVA_03494at 252.659 kb on + strand, within BACOVA_03494at 252.659 kb on + strand, within BACOVA_03494at 252.660 kb on - strand, within BACOVA_03494at 252.660 kb on - strand, within BACOVA_03494at 252.660 kb on - strand, within BACOVA_03494at 252.660 kb on - strand, within BACOVA_03494at 252.677 kb on + strand, within BACOVA_03494at 252.680 kb on - strand, within BACOVA_03494at 252.680 kb on - strand, within BACOVA_03494at 252.735 kb on + strand, within BACOVA_03494at 252.736 kb on - strand, within BACOVA_03494at 252.749 kb on + strand, within BACOVA_03494at 252.749 kb on + strand, within BACOVA_03494at 252.750 kb on - strand, within BACOVA_03494at 252.803 kb on + strand, within BACOVA_03494at 252.804 kb on - strand, within BACOVA_03494at 252.830 kb on + strand, within BACOVA_03494at 252.831 kb on - strand, within BACOVA_03494at 252.885 kb on + strand, within BACOVA_03494at 252.886 kb on - strand, within BACOVA_03494at 252.927 kb on + strand, within BACOVA_03494at 253.038 kb on + strandat 253.051 kb on - strandat 253.106 kb on - strandat 253.106 kb on - strandat 253.119 kb on - strandat 253.165 kb on - strandat 253.167 kb on - strandat 253.186 kb on + strandat 253.210 kb on - strandat 253.222 kb on - strandat 253.255 kb on + strand, within BACOVA_03495at 253.383 kb on + strand, within BACOVA_03495at 253.383 kb on + strand, within BACOVA_03495at 253.383 kb on + strand, within BACOVA_03495at 253.383 kb on + strand, within BACOVA_03495at 253.393 kb on - strand, within BACOVA_03495at 253.397 kb on - strand, within BACOVA_03495at 253.432 kb on + strand, within BACOVA_03495at 253.432 kb on + strand, within BACOVA_03495at 253.433 kb on - strand, within BACOVA_03495at 253.487 kb on + strand, within BACOVA_03495at 253.531 kb on - strand, within BACOVA_03495at 253.545 kb on + strand, within BACOVA_03495at 253.545 kb on + strand, within BACOVA_03495at 253.546 kb on - strand, within BACOVA_03495at 253.546 kb on - strand, within BACOVA_03495at 253.546 kb on - strand, within BACOVA_03495at 253.547 kb on + strand, within BACOVA_03495at 253.547 kb on + strand, within BACOVA_03495at 253.547 kb on + strand, within BACOVA_03495at 253.547 kb on + strand, within BACOVA_03495at 253.549 kb on + strand, within BACOVA_03495at 253.550 kb on - strand, within BACOVA_03495at 253.598 kb on + strand, within BACOVA_03495at 253.627 kb on - strand, within BACOVA_03495at 253.627 kb on - strand, within BACOVA_03495at 253.627 kb on - strand, within BACOVA_03495at 253.630 kb on - strand, within BACOVA_03495at 253.660 kb on - strand, within BACOVA_03495at 253.660 kb on - strand, within BACOVA_03495at 253.687 kb on - strand, within BACOVA_03495at 253.701 kb on - strand, within BACOVA_03495at 253.806 kb on - strand, within BACOVA_03495at 253.820 kb on + strand, within BACOVA_03495at 253.867 kb on + strand, within BACOVA_03495at 253.948 kb on - strand, within BACOVA_03495at 253.963 kb on - strand, within BACOVA_03495at 253.963 kb on - strand, within BACOVA_03495at 253.963 kb on - strand, within BACOVA_03495at 253.965 kb on - strand, within BACOVA_03495at 253.975 kb on + strand, within BACOVA_03495at 254.029 kb on + strand, within BACOVA_03495

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
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250,891 + BACOVA_03493 0.21 -0.4
250,894 - BACOVA_03493 0.21 -0.3
250,909 - BACOVA_03493 0.22 -0.3
250,923 - BACOVA_03493 0.23 +0.4
250,924 + BACOVA_03493 0.24 +0.1
250,924 + BACOVA_03493 0.24 +0.2
250,926 + BACOVA_03493 0.24 +0.2
250,926 + BACOVA_03493 0.24 +0.4
250,926 + BACOVA_03493 0.24 +1.2
250,926 + BACOVA_03493 0.24 -0.3
250,927 - BACOVA_03493 0.24 -0.5
250,927 - BACOVA_03493 0.24 -0.6
250,927 - BACOVA_03493 0.24 +1.8
250,927 - BACOVA_03493 0.24 -0.3
250,932 + BACOVA_03493 0.24 +0.3
250,961 - BACOVA_03493 0.26 +0.7
251,058 - BACOVA_03493 0.34 -1.9
251,079 + BACOVA_03493 0.35 +0.8
251,079 + BACOVA_03493 0.35 +0.2
251,080 - BACOVA_03493 0.36 +0.6
251,175 + BACOVA_03493 0.43 -0.2
251,175 + BACOVA_03493 0.43 +0.2
251,176 - BACOVA_03493 0.43 +0.7
251,195 - BACOVA_03493 0.44 +0.4
251,208 - BACOVA_03493 0.45 -0.6
251,219 + BACOVA_03493 0.46 -0.5
251,293 + BACOVA_03493 0.52 +0.8
251,335 + BACOVA_03493 0.55 -0.6
251,387 + BACOVA_03493 0.59 -0.5
251,387 + BACOVA_03493 0.59 +0.6
251,388 - BACOVA_03493 0.59 -0.6
251,434 + BACOVA_03493 0.63 -1.1
251,463 - BACOVA_03493 0.65 -1.1
251,465 - BACOVA_03493 0.65 -0.9
251,466 + BACOVA_03493 0.65 +0.3
251,466 + BACOVA_03493 0.65 -0.5
251,467 - BACOVA_03493 0.65 -0.6
251,467 - BACOVA_03493 0.65 -0.8
251,471 - BACOVA_03493 0.66 +0.2
251,471 - BACOVA_03493 0.66 +0.4
251,475 - BACOVA_03493 0.66 -0.6
251,553 + BACOVA_03493 0.72 -0.3
251,575 + BACOVA_03493 0.74 -0.0
251,608 + BACOVA_03493 0.76 -1.4
251,609 - BACOVA_03493 0.76 +0.3
251,654 - BACOVA_03493 0.80 -0.3
251,719 + BACOVA_03493 0.85 -0.1
251,820 + -2.3
251,880 - -0.3
251,896 + +0.4
251,903 - -1.1
251,908 + +0.0
251,909 - -0.5
251,909 - +0.1
251,912 + -1.7
251,918 + -0.3
251,929 + -1.8
251,929 + +0.2
251,930 - +0.0
251,932 - +0.7
252,019 + BACOVA_03494 0.12 -1.0
252,033 - BACOVA_03494 0.13 -1.5
252,042 - BACOVA_03494 0.14 +0.4
252,046 - BACOVA_03494 0.14 +0.2
252,100 - BACOVA_03494 0.19 -0.3
252,113 + BACOVA_03494 0.20 -0.2
252,124 - BACOVA_03494 0.21 -0.9
252,179 + BACOVA_03494 0.25 -2.4
252,179 + BACOVA_03494 0.25 +0.2
252,179 + BACOVA_03494 0.25 +0.2
252,180 - BACOVA_03494 0.26 -0.5
252,180 - BACOVA_03494 0.26 -0.6
252,225 + BACOVA_03494 0.29 +0.3
252,231 + BACOVA_03494 0.30 -0.4
252,232 - BACOVA_03494 0.30 -0.2
252,249 + BACOVA_03494 0.31 -0.1
252,250 - BACOVA_03494 0.32 -0.8
252,250 - BACOVA_03494 0.32 +0.2
252,288 + BACOVA_03494 0.35 -1.0
252,288 + BACOVA_03494 0.35 -1.7
252,301 - BACOVA_03494 0.36 +0.7
252,302 + BACOVA_03494 0.36 -0.1
252,355 - BACOVA_03494 0.40 -1.5
252,403 + BACOVA_03494 0.45 +0.5
252,403 + BACOVA_03494 0.45 -1.1
252,404 - BACOVA_03494 0.45 -0.3
252,406 - BACOVA_03494 0.45 +0.2
252,406 - BACOVA_03494 0.45 -0.6
252,407 + BACOVA_03494 0.45 -0.4
252,407 + BACOVA_03494 0.45 -0.1
252,435 + BACOVA_03494 0.47 +0.4
252,436 - BACOVA_03494 0.47 -0.4
252,438 - BACOVA_03494 0.48 +1.4
252,480 + BACOVA_03494 0.51 +0.4
252,480 + BACOVA_03494 0.51 +0.1
252,480 + BACOVA_03494 0.51 -0.6
252,489 + BACOVA_03494 0.52 -1.1
252,500 + BACOVA_03494 0.53 -0.4
252,500 + BACOVA_03494 0.53 +0.3
252,501 - BACOVA_03494 0.53 +0.2
252,501 - BACOVA_03494 0.53 +1.9
252,501 - BACOVA_03494 0.53 -0.5
252,504 - BACOVA_03494 0.53 -1.2
252,504 - BACOVA_03494 0.53 +0.6
252,504 - BACOVA_03494 0.53 -0.7
252,504 - BACOVA_03494 0.53 -0.9
252,504 - BACOVA_03494 0.53 -0.1
252,507 + BACOVA_03494 0.53 +0.6
252,507 + BACOVA_03494 0.53 -0.3
252,552 + BACOVA_03494 0.57 +0.5
252,552 + BACOVA_03494 0.57 +0.2
252,553 - BACOVA_03494 0.57 +0.8
252,553 - BACOVA_03494 0.57 -1.2
252,659 + BACOVA_03494 0.66 +0.4
252,659 + BACOVA_03494 0.66 +0.0
252,660 - BACOVA_03494 0.66 +1.2
252,660 - BACOVA_03494 0.66 -0.4
252,660 - BACOVA_03494 0.66 -1.4
252,660 - BACOVA_03494 0.66 -1.8
252,677 + BACOVA_03494 0.68 +0.3
252,680 - BACOVA_03494 0.68 -0.4
252,680 - BACOVA_03494 0.68 -0.4
252,735 + BACOVA_03494 0.73 +0.4
252,736 - BACOVA_03494 0.73 +0.5
252,749 + BACOVA_03494 0.74 +0.2
252,749 + BACOVA_03494 0.74 -1.0
252,750 - BACOVA_03494 0.74 +0.2
252,803 + BACOVA_03494 0.79 -0.2
252,804 - BACOVA_03494 0.79 -0.8
252,830 + BACOVA_03494 0.81 -0.7
252,831 - BACOVA_03494 0.81 +0.7
252,885 + BACOVA_03494 0.86 -0.0
252,886 - BACOVA_03494 0.86 -0.1
252,927 + BACOVA_03494 0.89 -0.2
253,038 + -1.1
253,051 - -0.7
253,106 - +0.0
253,106 - -1.1
253,119 - +0.2
253,165 - -2.1
253,167 - -1.0
253,186 + -0.6
253,210 - +0.1
253,222 - -0.3
253,255 + BACOVA_03495 0.11 -0.3
253,383 + BACOVA_03495 0.24 +0.2
253,383 + BACOVA_03495 0.24 -0.6
253,383 + BACOVA_03495 0.24 +1.3
253,383 + BACOVA_03495 0.24 -0.2
253,393 - BACOVA_03495 0.24 +0.1
253,397 - BACOVA_03495 0.25 +1.2
253,432 + BACOVA_03495 0.28 -0.6
253,432 + BACOVA_03495 0.28 -1.3
253,433 - BACOVA_03495 0.28 -0.6
253,487 + BACOVA_03495 0.34 +1.0
253,531 - BACOVA_03495 0.38 +0.0
253,545 + BACOVA_03495 0.39 -1.5
253,545 + BACOVA_03495 0.39 +0.8
253,546 - BACOVA_03495 0.40 -2.3
253,546 - BACOVA_03495 0.40 -2.9
253,546 - BACOVA_03495 0.40 -0.6
253,547 + BACOVA_03495 0.40 +1.0
253,547 + BACOVA_03495 0.40 -0.8
253,547 + BACOVA_03495 0.40 -1.0
253,547 + BACOVA_03495 0.40 -0.1
253,549 + BACOVA_03495 0.40 -1.0
253,550 - BACOVA_03495 0.40 -0.8
253,598 + BACOVA_03495 0.45 +0.6
253,627 - BACOVA_03495 0.47 +0.2
253,627 - BACOVA_03495 0.47 -0.2
253,627 - BACOVA_03495 0.47 -0.2
253,630 - BACOVA_03495 0.48 -0.3
253,660 - BACOVA_03495 0.51 -0.7
253,660 - BACOVA_03495 0.51 -1.3
253,687 - BACOVA_03495 0.53 -1.2
253,701 - BACOVA_03495 0.55 -1.6
253,806 - BACOVA_03495 0.65 -0.9
253,820 + BACOVA_03495 0.66 -1.4
253,867 + BACOVA_03495 0.71 -0.3
253,948 - BACOVA_03495 0.79 +0.2
253,963 - BACOVA_03495 0.81 -0.8
253,963 - BACOVA_03495 0.81 -0.6
253,963 - BACOVA_03495 0.81 +0.1
253,965 - BACOVA_03495 0.81 -0.2
253,975 + BACOVA_03495 0.82 -0.8
254,029 + BACOVA_03495 0.87 -1.8

Or see this region's nucleotide sequence