Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03491 and BACOVA_03492 are separated by 216 nucleotides BACOVA_03492 and BACOVA_03493 are separated by 9 nucleotides
BACOVA_03491: BACOVA_03491 - hypothetical protein, at 247,613 to 249,346
_03491
BACOVA_03492: BACOVA_03492 - glycosyl hydrolase, family 43, at 249,563 to 250,609
_03492
BACOVA_03493: BACOVA_03493 - hypothetical protein, at 250,619 to 251,914
_03493
Position (kb) 249
250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 248.564 kb on + strand, within BACOVA_03491 at 248.567 kb on + strand, within BACOVA_03491 at 248.567 kb on + strand, within BACOVA_03491 at 248.571 kb on - strand, within BACOVA_03491 at 248.661 kb on - strand, within BACOVA_03491 at 248.661 kb on - strand, within BACOVA_03491 at 248.661 kb on - strand, within BACOVA_03491 at 248.696 kb on - strand, within BACOVA_03491 at 248.703 kb on + strand, within BACOVA_03491 at 248.705 kb on + strand, within BACOVA_03491 at 248.705 kb on + strand, within BACOVA_03491 at 248.705 kb on + strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.706 kb on - strand, within BACOVA_03491 at 248.732 kb on + strand, within BACOVA_03491 at 248.733 kb on - strand, within BACOVA_03491 at 248.733 kb on - strand, within BACOVA_03491 at 248.737 kb on + strand, within BACOVA_03491 at 248.738 kb on - strand, within BACOVA_03491 at 248.738 kb on - strand, within BACOVA_03491 at 248.745 kb on - strand, within BACOVA_03491 at 248.786 kb on - strand, within BACOVA_03491 at 248.837 kb on + strand, within BACOVA_03491 at 248.837 kb on + strand, within BACOVA_03491 at 248.839 kb on + strand, within BACOVA_03491 at 248.839 kb on + strand, within BACOVA_03491 at 248.840 kb on - strand, within BACOVA_03491 at 248.840 kb on - strand, within BACOVA_03491 at 248.895 kb on - strand, within BACOVA_03491 at 248.898 kb on - strand, within BACOVA_03491 at 248.916 kb on + strand, within BACOVA_03491 at 248.934 kb on - strand, within BACOVA_03491 at 248.934 kb on - strand, within BACOVA_03491 at 249.059 kb on - strand, within BACOVA_03491 at 249.059 kb on - strand, within BACOVA_03491 at 249.117 kb on - strand, within BACOVA_03491 at 249.117 kb on - strand, within BACOVA_03491 at 249.120 kb on + strand, within BACOVA_03491 at 249.153 kb on - strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.165 kb on + strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.166 kb on - strand, within BACOVA_03491 at 249.167 kb on + strand, within BACOVA_03491 at 249.168 kb on - strand, within BACOVA_03491 at 249.169 kb on + strand, within BACOVA_03491 at 249.239 kb on + strand at 249.240 kb on - strand at 249.241 kb on + strand at 249.254 kb on + strand at 249.255 kb on - strand at 249.283 kb on + strand at 249.297 kb on + strand at 249.298 kb on - strand at 249.298 kb on - strand at 249.303 kb on + strand at 249.305 kb on + strand at 249.305 kb on + strand at 249.306 kb on - strand at 249.307 kb on + strand at 249.307 kb on + strand at 249.307 kb on + strand at 249.307 kb on + strand at 249.404 kb on - strand at 249.407 kb on - strand at 249.408 kb on + strand at 249.409 kb on - strand at 249.409 kb on - strand at 249.448 kb on + strand at 249.448 kb on + strand at 249.448 kb on + strand at 249.452 kb on - strand at 249.456 kb on + strand at 249.456 kb on + strand at 249.462 kb on + strand at 249.482 kb on + strand at 249.499 kb on - strand at 249.500 kb on + strand at 249.501 kb on - strand at 249.501 kb on - strand at 249.501 kb on - strand at 249.523 kb on + strand at 249.536 kb on - strand at 249.556 kb on + strand at 249.568 kb on + strand at 249.593 kb on - strand at 249.599 kb on - strand at 249.601 kb on - strand at 249.603 kb on + strand at 249.604 kb on - strand at 249.606 kb on + strand at 249.619 kb on + strand at 249.620 kb on - strand at 249.627 kb on + strand at 249.637 kb on - strand at 249.637 kb on - strand at 249.656 kb on + strand at 249.657 kb on - strand at 249.659 kb on - strand at 249.732 kb on + strand, within BACOVA_03492 at 249.733 kb on - strand, within BACOVA_03492 at 249.733 kb on - strand, within BACOVA_03492 at 249.733 kb on - strand, within BACOVA_03492 at 249.735 kb on - strand, within BACOVA_03492 at 249.739 kb on + strand, within BACOVA_03492 at 249.749 kb on + strand, within BACOVA_03492 at 249.750 kb on - strand, within BACOVA_03492 at 249.752 kb on + strand, within BACOVA_03492 at 249.758 kb on + strand, within BACOVA_03492 at 249.759 kb on - strand, within BACOVA_03492 at 249.767 kb on + strand, within BACOVA_03492 at 249.767 kb on + strand, within BACOVA_03492 at 249.803 kb on - strand, within BACOVA_03492 at 249.820 kb on + strand, within BACOVA_03492 at 249.837 kb on + strand, within BACOVA_03492 at 249.846 kb on - strand, within BACOVA_03492 at 249.940 kb on - strand, within BACOVA_03492 at 249.965 kb on - strand, within BACOVA_03492 at 249.987 kb on + strand, within BACOVA_03492 at 250.016 kb on + strand, within BACOVA_03492 at 250.016 kb on + strand, within BACOVA_03492 at 250.016 kb on + strand, within BACOVA_03492 at 250.021 kb on + strand, within BACOVA_03492 at 250.148 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.184 kb on + strand, within BACOVA_03492 at 250.185 kb on - strand, within BACOVA_03492 at 250.187 kb on - strand, within BACOVA_03492 at 250.187 kb on - strand, within BACOVA_03492 at 250.208 kb on + strand, within BACOVA_03492 at 250.208 kb on + strand, within BACOVA_03492 at 250.231 kb on + strand, within BACOVA_03492 at 250.276 kb on + strand, within BACOVA_03492 at 250.277 kb on - strand, within BACOVA_03492 at 250.282 kb on + strand, within BACOVA_03492 at 250.288 kb on + strand, within BACOVA_03492 at 250.288 kb on + strand, within BACOVA_03492 at 250.297 kb on + strand, within BACOVA_03492 at 250.303 kb on - strand, within BACOVA_03492 at 250.330 kb on + strand, within BACOVA_03492 at 250.330 kb on + strand, within BACOVA_03492 at 250.360 kb on + strand, within BACOVA_03492 at 250.361 kb on - strand, within BACOVA_03492 at 250.363 kb on + strand, within BACOVA_03492 at 250.364 kb on - strand, within BACOVA_03492 at 250.396 kb on + strand, within BACOVA_03492 at 250.436 kb on - strand, within BACOVA_03492 at 250.439 kb on + strand, within BACOVA_03492 at 250.440 kb on - strand, within BACOVA_03492 at 250.440 kb on - strand, within BACOVA_03492 at 250.472 kb on + strand, within BACOVA_03492 at 250.474 kb on + strand, within BACOVA_03492 at 250.474 kb on + strand, within BACOVA_03492 at 250.474 kb on + strand, within BACOVA_03492 at 250.475 kb on - strand, within BACOVA_03492 at 250.523 kb on + strand at 250.527 kb on + strand at 250.527 kb on + strand at 250.528 kb on - strand at 250.560 kb on + strand at 250.560 kb on + strand at 250.709 kb on - strand at 250.714 kb on + strand at 250.714 kb on + strand at 250.775 kb on + strand, within BACOVA_03493 at 250.776 kb on - strand, within BACOVA_03493 at 250.776 kb on - strand, within BACOVA_03493 at 250.776 kb on - strand, within BACOVA_03493 at 250.776 kb on - strand, within BACOVA_03493 at 250.776 kb on - strand, within BACOVA_03493 at 250.777 kb on + strand, within BACOVA_03493 at 250.787 kb on + strand, within BACOVA_03493 at 250.803 kb on - strand, within BACOVA_03493 at 250.809 kb on + strand, within BACOVA_03493 at 250.849 kb on - strand, within BACOVA_03493 at 250.891 kb on + strand, within BACOVA_03493 at 250.894 kb on - strand, within BACOVA_03493 at 250.909 kb on - strand, within BACOVA_03493 at 250.923 kb on - strand, within BACOVA_03493 at 250.924 kb on + strand, within BACOVA_03493 at 250.924 kb on + strand, within BACOVA_03493 at 250.926 kb on + strand, within BACOVA_03493 at 250.926 kb on + strand, within BACOVA_03493 at 250.926 kb on + strand, within BACOVA_03493 at 250.926 kb on + strand, within BACOVA_03493 at 250.927 kb on - strand, within BACOVA_03493 at 250.927 kb on - strand, within BACOVA_03493 at 250.927 kb on - strand, within BACOVA_03493 at 250.927 kb on - strand, within BACOVA_03493 at 250.932 kb on + strand, within BACOVA_03493 at 250.961 kb on - strand, within BACOVA_03493 at 251.058 kb on - strand, within BACOVA_03493 at 251.079 kb on + strand, within BACOVA_03493 at 251.079 kb on + strand, within BACOVA_03493 at 251.080 kb on - strand, within BACOVA_03493 at 251.175 kb on + strand, within BACOVA_03493 at 251.175 kb on + strand, within BACOVA_03493 at 251.176 kb on - strand, within BACOVA_03493 at 251.195 kb on - strand, within BACOVA_03493 at 251.208 kb on - strand, within BACOVA_03493 at 251.219 kb on + strand, within BACOVA_03493 at 251.293 kb on + strand, within BACOVA_03493 at 251.335 kb on + strand, within BACOVA_03493 at 251.387 kb on + strand, within BACOVA_03493 at 251.387 kb on + strand, within BACOVA_03493 at 251.388 kb on - strand, within BACOVA_03493 at 251.434 kb on + strand, within BACOVA_03493 at 251.463 kb on - strand, within BACOVA_03493 at 251.465 kb on - strand, within BACOVA_03493 at 251.466 kb on + strand, within BACOVA_03493 at 251.466 kb on + strand, within BACOVA_03493 at 251.467 kb on - strand, within BACOVA_03493 at 251.467 kb on - strand, within BACOVA_03493 at 251.471 kb on - strand, within BACOVA_03493 at 251.471 kb on - strand, within BACOVA_03493 at 251.475 kb on - strand, within BACOVA_03493 at 251.553 kb on + strand, within BACOVA_03493 at 251.575 kb on + strand, within BACOVA_03493 at 251.608 kb on + strand, within BACOVA_03493 at 251.609 kb on - strand, within BACOVA_03493
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C) remove 248,564 + BACOVA_03491 0.55 +0.2 248,567 + BACOVA_03491 0.55 +0.2 248,567 + BACOVA_03491 0.55 +0.1 248,571 - BACOVA_03491 0.55 -1.0 248,661 - BACOVA_03491 0.60 -0.8 248,661 - BACOVA_03491 0.60 -2.1 248,661 - BACOVA_03491 0.60 -1.5 248,696 - BACOVA_03491 0.62 +0.1 248,703 + BACOVA_03491 0.63 -1.6 248,705 + BACOVA_03491 0.63 -0.6 248,705 + BACOVA_03491 0.63 -1.3 248,705 + BACOVA_03491 0.63 -0.3 248,706 - BACOVA_03491 0.63 -0.5 248,706 - BACOVA_03491 0.63 -0.8 248,706 - BACOVA_03491 0.63 -1.0 248,706 - BACOVA_03491 0.63 +0.1 248,732 + BACOVA_03491 0.65 +0.2 248,733 - BACOVA_03491 0.65 +0.7 248,733 - BACOVA_03491 0.65 +0.2 248,737 + BACOVA_03491 0.65 +1.8 248,738 - BACOVA_03491 0.65 -0.7 248,738 - BACOVA_03491 0.65 -0.5 248,745 - BACOVA_03491 0.65 +1.0 248,786 - BACOVA_03491 0.68 +1.2 248,837 + BACOVA_03491 0.71 +0.2 248,837 + BACOVA_03491 0.71 +1.0 248,839 + BACOVA_03491 0.71 -2.9 248,839 + BACOVA_03491 0.71 -2.4 248,840 - BACOVA_03491 0.71 -2.3 248,840 - BACOVA_03491 0.71 +1.2 248,895 - BACOVA_03491 0.74 +0.5 248,898 - BACOVA_03491 0.74 -1.3 248,916 + BACOVA_03491 0.75 -0.3 248,934 - BACOVA_03491 0.76 -0.4 248,934 - BACOVA_03491 0.76 -0.4 249,059 - BACOVA_03491 0.83 +0.3 249,059 - BACOVA_03491 0.83 -0.3 249,117 - BACOVA_03491 0.87 -0.0 249,117 - BACOVA_03491 0.87 +0.3 249,120 + BACOVA_03491 0.87 -2.9 249,153 - BACOVA_03491 0.89 +1.2 249,165 + BACOVA_03491 0.90 -0.3 249,165 + BACOVA_03491 0.90 -0.6 249,165 + BACOVA_03491 0.90 -0.7 249,165 + BACOVA_03491 0.90 -0.2 249,166 - BACOVA_03491 0.90 +0.4 249,166 - BACOVA_03491 0.90 -1.1 249,166 - BACOVA_03491 0.90 +1.0 249,166 - BACOVA_03491 0.90 +0.5 249,167 + BACOVA_03491 0.90 +0.7 249,168 - BACOVA_03491 0.90 -0.1 249,169 + BACOVA_03491 0.90 +0.2 249,239 + -1.0 249,240 - -0.1 249,241 + -0.8 249,254 + +0.3 249,255 - +0.2 249,283 + +0.1 249,297 + +0.0 249,298 - -0.2 249,298 - +0.5 249,303 + -1.1 249,305 + -1.0 249,305 + -0.3 249,306 - -0.4 249,307 + +0.3 249,307 + -0.6 249,307 + +0.1 249,307 + +1.6 249,404 - -1.2 249,407 - -1.5 249,408 + -1.4 249,409 - +0.1 249,409 - +0.4 249,448 + +0.3 249,448 + +0.1 249,448 + -0.6 249,452 - +0.3 249,456 + +1.7 249,456 + -1.0 249,462 + -0.6 249,482 + -0.3 249,499 - +1.0 249,500 + +0.6 249,501 - +0.3 249,501 - -0.3 249,501 - -0.7 249,523 + +0.8 249,536 - +0.2 249,556 + -1.0 249,568 + -0.4 249,593 - -1.3 249,599 - -0.8 249,601 - -0.6 249,603 + -1.1 249,604 - -0.1 249,606 + -0.0 249,619 + -1.0 249,620 - +0.9 249,627 + -0.9 249,637 - +0.1 249,637 - -0.1 249,656 + +0.9 249,657 - +0.3 249,659 - +0.3 249,732 + BACOVA_03492 0.16 -0.3 249,733 - BACOVA_03492 0.16 +0.0 249,733 - BACOVA_03492 0.16 -0.7 249,733 - BACOVA_03492 0.16 -2.6 249,735 - BACOVA_03492 0.16 +0.2 249,739 + BACOVA_03492 0.17 -0.5 249,749 + BACOVA_03492 0.18 -0.3 249,750 - BACOVA_03492 0.18 -1.4 249,752 + BACOVA_03492 0.18 +0.8 249,758 + BACOVA_03492 0.19 -0.7 249,759 - BACOVA_03492 0.19 +0.2 249,767 + BACOVA_03492 0.19 +1.7 249,767 + BACOVA_03492 0.19 -0.5 249,803 - BACOVA_03492 0.23 +0.2 249,820 + BACOVA_03492 0.25 +2.0 249,837 + BACOVA_03492 0.26 -0.7 249,846 - BACOVA_03492 0.27 -0.5 249,940 - BACOVA_03492 0.36 +0.1 249,965 - BACOVA_03492 0.38 -1.5 249,987 + BACOVA_03492 0.40 -0.1 250,016 + BACOVA_03492 0.43 -2.1 250,016 + BACOVA_03492 0.43 +0.5 250,016 + BACOVA_03492 0.43 +1.4 250,021 + BACOVA_03492 0.44 +0.2 250,148 + BACOVA_03492 0.56 -0.4 250,184 + BACOVA_03492 0.59 -0.4 250,184 + BACOVA_03492 0.59 -1.9 250,184 + BACOVA_03492 0.59 -0.5 250,184 + BACOVA_03492 0.59 +1.0 250,184 + BACOVA_03492 0.59 -0.2 250,185 - BACOVA_03492 0.59 -0.4 250,187 - BACOVA_03492 0.60 +0.4 250,187 - BACOVA_03492 0.60 +0.4 250,208 + BACOVA_03492 0.62 +0.5 250,208 + BACOVA_03492 0.62 -1.5 250,231 + BACOVA_03492 0.64 -0.6 250,276 + BACOVA_03492 0.68 +0.1 250,277 - BACOVA_03492 0.68 -0.1 250,282 + BACOVA_03492 0.69 -2.3 250,288 + BACOVA_03492 0.69 -1.4 250,288 + BACOVA_03492 0.69 +0.8 250,297 + BACOVA_03492 0.70 +2.6 250,303 - BACOVA_03492 0.71 +1.2 250,330 + BACOVA_03492 0.73 -0.8 250,330 + BACOVA_03492 0.73 -0.5 250,360 + BACOVA_03492 0.76 +0.2 250,361 - BACOVA_03492 0.76 +0.2 250,363 + BACOVA_03492 0.76 -1.8 250,364 - BACOVA_03492 0.77 -0.9 250,396 + BACOVA_03492 0.80 +1.1 250,436 - BACOVA_03492 0.83 -1.2 250,439 + BACOVA_03492 0.84 +0.6 250,440 - BACOVA_03492 0.84 -1.5 250,440 - BACOVA_03492 0.84 -0.8 250,472 + BACOVA_03492 0.87 -1.9 250,474 + BACOVA_03492 0.87 +0.5 250,474 + BACOVA_03492 0.87 +0.0 250,474 + BACOVA_03492 0.87 +1.2 250,475 - BACOVA_03492 0.87 +0.5 250,523 + +0.6 250,527 + +0.5 250,527 + +0.4 250,528 - +0.2 250,560 + +0.5 250,560 + -0.3 250,709 - -0.5 250,714 + +0.2 250,714 + -0.2 250,775 + BACOVA_03493 0.12 +0.6 250,776 - BACOVA_03493 0.12 -0.4 250,776 - BACOVA_03493 0.12 -1.3 250,776 - BACOVA_03493 0.12 +0.4 250,776 - BACOVA_03493 0.12 +0.1 250,776 - BACOVA_03493 0.12 -0.9 250,777 + BACOVA_03493 0.12 +0.0 250,787 + BACOVA_03493 0.13 -0.5 250,803 - BACOVA_03493 0.14 +0.6 250,809 + BACOVA_03493 0.15 -0.5 250,849 - BACOVA_03493 0.18 -0.1 250,891 + BACOVA_03493 0.21 -0.4 250,894 - BACOVA_03493 0.21 -0.3 250,909 - BACOVA_03493 0.22 -0.3 250,923 - BACOVA_03493 0.23 +0.4 250,924 + BACOVA_03493 0.24 +0.1 250,924 + BACOVA_03493 0.24 +0.2 250,926 + BACOVA_03493 0.24 +0.2 250,926 + BACOVA_03493 0.24 +0.4 250,926 + BACOVA_03493 0.24 +1.2 250,926 + BACOVA_03493 0.24 -0.3 250,927 - BACOVA_03493 0.24 -0.5 250,927 - BACOVA_03493 0.24 -0.6 250,927 - BACOVA_03493 0.24 +1.8 250,927 - BACOVA_03493 0.24 -0.3 250,932 + BACOVA_03493 0.24 +0.3 250,961 - BACOVA_03493 0.26 +0.7 251,058 - BACOVA_03493 0.34 -1.9 251,079 + BACOVA_03493 0.35 +0.8 251,079 + BACOVA_03493 0.35 +0.2 251,080 - BACOVA_03493 0.36 +0.6 251,175 + BACOVA_03493 0.43 -0.2 251,175 + BACOVA_03493 0.43 +0.2 251,176 - BACOVA_03493 0.43 +0.7 251,195 - BACOVA_03493 0.44 +0.4 251,208 - BACOVA_03493 0.45 -0.6 251,219 + BACOVA_03493 0.46 -0.5 251,293 + BACOVA_03493 0.52 +0.8 251,335 + BACOVA_03493 0.55 -0.6 251,387 + BACOVA_03493 0.59 -0.5 251,387 + BACOVA_03493 0.59 +0.6 251,388 - BACOVA_03493 0.59 -0.6 251,434 + BACOVA_03493 0.63 -1.1 251,463 - BACOVA_03493 0.65 -1.1 251,465 - BACOVA_03493 0.65 -0.9 251,466 + BACOVA_03493 0.65 +0.3 251,466 + BACOVA_03493 0.65 -0.5 251,467 - BACOVA_03493 0.65 -0.6 251,467 - BACOVA_03493 0.65 -0.8 251,471 - BACOVA_03493 0.66 +0.2 251,471 - BACOVA_03493 0.66 +0.4 251,475 - BACOVA_03493 0.66 -0.6 251,553 + BACOVA_03493 0.72 -0.3 251,575 + BACOVA_03493 0.74 -0.0 251,608 + BACOVA_03493 0.76 -1.4 251,609 - BACOVA_03493 0.76 +0.3
Or see this region's nucleotide sequence