Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03060 and BACOVA_03061 are separated by 14 nucleotides BACOVA_03061 and BACOVA_03062 are separated by 91 nucleotides
BACOVA_03060: BACOVA_03060 - transcriptional regulator, AraC family, at 130,530 to 131,402
_03060
BACOVA_03061: BACOVA_03061 - hypothetical protein, at 131,417 to 131,581
_03061
BACOVA_03062: BACOVA_03062 - SusD family protein, at 131,673 to 133,511
_03062
Position (kb) 131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.428 kb on - strand at 130.430 kb on - strand at 130.430 kb on - strand at 130.482 kb on - strand at 130.484 kb on + strand at 130.502 kb on + strand at 130.502 kb on + strand at 130.503 kb on - strand at 130.511 kb on + strand at 130.518 kb on - strand at 130.529 kb on + strand at 130.530 kb on - strand at 130.550 kb on - strand at 130.584 kb on + strand at 130.585 kb on - strand at 130.613 kb on + strand at 130.613 kb on + strand at 130.614 kb on - strand at 130.614 kb on - strand at 130.615 kb on + strand at 130.615 kb on + strand at 130.616 kb on - strand at 130.629 kb on - strand, within BACOVA_03060 at 130.695 kb on - strand, within BACOVA_03060 at 130.719 kb on - strand, within BACOVA_03060 at 130.740 kb on + strand, within BACOVA_03060 at 130.740 kb on + strand, within BACOVA_03060 at 130.741 kb on - strand, within BACOVA_03060 at 130.742 kb on + strand, within BACOVA_03060 at 130.742 kb on + strand, within BACOVA_03060 at 130.743 kb on - strand, within BACOVA_03060 at 130.745 kb on + strand, within BACOVA_03060 at 130.746 kb on - strand, within BACOVA_03060 at 130.746 kb on - strand, within BACOVA_03060 at 130.748 kb on + strand, within BACOVA_03060 at 130.840 kb on - strand, within BACOVA_03060 at 130.857 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.884 kb on - strand, within BACOVA_03060 at 130.970 kb on + strand, within BACOVA_03060 at 130.971 kb on - strand, within BACOVA_03060 at 130.979 kb on + strand, within BACOVA_03060 at 131.048 kb on + strand, within BACOVA_03060 at 131.049 kb on - strand, within BACOVA_03060 at 131.109 kb on - strand, within BACOVA_03060 at 131.202 kb on - strand, within BACOVA_03060 at 131.202 kb on - strand, within BACOVA_03060 at 131.215 kb on + strand, within BACOVA_03060 at 131.337 kb on + strand at 131.405 kb on - strand at 131.422 kb on + strand at 131.425 kb on + strand at 131.434 kb on + strand, within BACOVA_03061 at 131.434 kb on + strand, within BACOVA_03061 at 131.434 kb on + strand, within BACOVA_03061 at 131.445 kb on + strand, within BACOVA_03061 at 131.454 kb on + strand, within BACOVA_03061 at 131.455 kb on - strand, within BACOVA_03061 at 131.469 kb on + strand, within BACOVA_03061 at 131.501 kb on + strand, within BACOVA_03061 at 131.503 kb on + strand, within BACOVA_03061 at 131.504 kb on - strand, within BACOVA_03061 at 131.507 kb on + strand, within BACOVA_03061 at 131.509 kb on + strand, within BACOVA_03061 at 131.510 kb on - strand, within BACOVA_03061 at 131.562 kb on + strand, within BACOVA_03061 at 131.569 kb on + strand at 131.575 kb on + strand at 131.576 kb on - strand at 131.579 kb on + strand at 131.579 kb on + strand at 131.579 kb on + strand at 131.588 kb on + strand at 131.588 kb on + strand at 131.609 kb on + strand at 131.612 kb on + strand at 131.613 kb on - strand at 131.614 kb on + strand at 131.617 kb on + strand at 131.618 kb on - strand at 131.622 kb on + strand at 131.623 kb on - strand at 131.654 kb on + strand at 131.655 kb on - strand at 131.655 kb on - strand at 131.674 kb on + strand at 131.675 kb on - strand at 131.675 kb on - strand at 131.720 kb on + strand at 131.727 kb on - strand at 131.742 kb on + strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.749 kb on + strand at 131.772 kb on + strand at 131.849 kb on - strand at 131.881 kb on - strand, within BACOVA_03062 at 131.881 kb on - strand, within BACOVA_03062 at 131.897 kb on + strand, within BACOVA_03062 at 131.897 kb on + strand, within BACOVA_03062 at 131.897 kb on + strand, within BACOVA_03062 at 131.909 kb on + strand, within BACOVA_03062 at 131.910 kb on - strand, within BACOVA_03062 at 131.910 kb on - strand, within BACOVA_03062 at 131.948 kb on + strand, within BACOVA_03062 at 131.948 kb on + strand, within BACOVA_03062 at 131.948 kb on + strand, within BACOVA_03062 at 131.949 kb on - strand, within BACOVA_03062 at 132.007 kb on + strand, within BACOVA_03062 at 132.008 kb on - strand, within BACOVA_03062 at 132.030 kb on - strand, within BACOVA_03062 at 132.076 kb on - strand, within BACOVA_03062 at 132.076 kb on - strand, within BACOVA_03062 at 132.080 kb on - strand, within BACOVA_03062 at 132.083 kb on - strand, within BACOVA_03062 at 132.083 kb on - strand, within BACOVA_03062 at 132.095 kb on + strand, within BACOVA_03062 at 132.102 kb on - strand, within BACOVA_03062 at 132.115 kb on + strand, within BACOVA_03062 at 132.118 kb on + strand, within BACOVA_03062 at 132.118 kb on + strand, within BACOVA_03062 at 132.119 kb on - strand, within BACOVA_03062 at 132.119 kb on - strand, within BACOVA_03062 at 132.121 kb on + strand, within BACOVA_03062 at 132.157 kb on + strand, within BACOVA_03062 at 132.157 kb on + strand, within BACOVA_03062 at 132.157 kb on + strand, within BACOVA_03062 at 132.158 kb on - strand, within BACOVA_03062 at 132.177 kb on - strand, within BACOVA_03062 at 132.177 kb on - strand, within BACOVA_03062 at 132.178 kb on + strand, within BACOVA_03062 at 132.184 kb on + strand, within BACOVA_03062 at 132.184 kb on + strand, within BACOVA_03062 at 132.204 kb on - strand, within BACOVA_03062 at 132.212 kb on + strand, within BACOVA_03062 at 132.215 kb on + strand, within BACOVA_03062 at 132.215 kb on + strand, within BACOVA_03062 at 132.216 kb on - strand, within BACOVA_03062 at 132.216 kb on - strand, within BACOVA_03062 at 132.217 kb on + strand, within BACOVA_03062 at 132.218 kb on - strand, within BACOVA_03062 at 132.218 kb on - strand, within BACOVA_03062 at 132.219 kb on + strand, within BACOVA_03062 at 132.219 kb on + strand, within BACOVA_03062 at 132.303 kb on - strand, within BACOVA_03062 at 132.364 kb on + strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.373 kb on - strand, within BACOVA_03062 at 132.394 kb on + strand, within BACOVA_03062 at 132.419 kb on + strand, within BACOVA_03062 at 132.465 kb on + strand, within BACOVA_03062 at 132.469 kb on + strand, within BACOVA_03062 at 132.470 kb on - strand, within BACOVA_03062 at 132.470 kb on - strand, within BACOVA_03062 at 132.470 kb on - strand, within BACOVA_03062 at 132.470 kb on - strand, within BACOVA_03062 at 132.480 kb on + strand, within BACOVA_03062 at 132.504 kb on - strand, within BACOVA_03062 at 132.527 kb on + strand, within BACOVA_03062 at 132.572 kb on + strand, within BACOVA_03062 at 132.572 kb on + strand, within BACOVA_03062 at 132.580 kb on - strand, within BACOVA_03062
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C) remove 130,428 - -0.1 130,430 - +0.2 130,430 - +0.1 130,482 - -0.3 130,484 + -0.9 130,502 + -0.9 130,502 + +0.5 130,503 - -1.5 130,511 + -0.1 130,518 - -0.7 130,529 + -0.8 130,530 - -0.8 130,550 - -0.5 130,584 + -0.7 130,585 - +0.7 130,613 + +1.1 130,613 + -1.1 130,614 - -0.9 130,614 - -0.9 130,615 + +0.8 130,615 + -0.7 130,616 - -1.5 130,629 - BACOVA_03060 0.11 +1.3 130,695 - BACOVA_03060 0.19 -0.1 130,719 - BACOVA_03060 0.22 -0.5 130,740 + BACOVA_03060 0.24 +0.2 130,740 + BACOVA_03060 0.24 +0.7 130,741 - BACOVA_03060 0.24 +1.0 130,742 + BACOVA_03060 0.24 +1.1 130,742 + BACOVA_03060 0.24 -0.1 130,743 - BACOVA_03060 0.24 +0.1 130,745 + BACOVA_03060 0.25 -0.6 130,746 - BACOVA_03060 0.25 +0.4 130,746 - BACOVA_03060 0.25 -0.9 130,748 + BACOVA_03060 0.25 +0.8 130,840 - BACOVA_03060 0.36 -0.4 130,857 - BACOVA_03060 0.37 -0.6 130,859 - BACOVA_03060 0.38 -1.3 130,859 - BACOVA_03060 0.38 +0.8 130,859 - BACOVA_03060 0.38 +0.1 130,859 - BACOVA_03060 0.38 +0.3 130,884 - BACOVA_03060 0.41 -0.1 130,970 + BACOVA_03060 0.50 -1.1 130,971 - BACOVA_03060 0.51 +0.8 130,979 + BACOVA_03060 0.51 +0.2 131,048 + BACOVA_03060 0.59 -0.2 131,049 - BACOVA_03060 0.59 +1.3 131,109 - BACOVA_03060 0.66 +0.2 131,202 - BACOVA_03060 0.77 -1.2 131,202 - BACOVA_03060 0.77 -0.3 131,215 + BACOVA_03060 0.78 +0.0 131,337 + -0.3 131,405 - +0.2 131,422 + -1.0 131,425 + -0.2 131,434 + BACOVA_03061 0.10 -0.2 131,434 + BACOVA_03061 0.10 -0.5 131,434 + BACOVA_03061 0.10 -0.6 131,445 + BACOVA_03061 0.17 -0.3 131,454 + BACOVA_03061 0.22 +0.7 131,455 - BACOVA_03061 0.23 -0.0 131,469 + BACOVA_03061 0.32 +0.6 131,501 + BACOVA_03061 0.51 -1.3 131,503 + BACOVA_03061 0.52 -0.1 131,504 - BACOVA_03061 0.53 +0.0 131,507 + BACOVA_03061 0.55 -0.1 131,509 + BACOVA_03061 0.56 -0.7 131,510 - BACOVA_03061 0.56 -0.3 131,562 + BACOVA_03061 0.88 +0.0 131,569 + -0.3 131,575 + +1.6 131,576 - -0.4 131,579 + -1.0 131,579 + -0.1 131,579 + -0.2 131,588 + +0.0 131,588 + -0.3 131,609 + -0.0 131,612 + +0.0 131,613 - +1.9 131,614 + -0.1 131,617 + -0.3 131,618 - -0.3 131,622 + -1.1 131,623 - -0.3 131,654 + -0.6 131,655 - +0.0 131,655 - -1.0 131,674 + -1.0 131,675 - +1.0 131,675 - +1.2 131,720 + +0.3 131,727 - -1.1 131,742 + +0.6 131,743 - +0.2 131,743 - +0.3 131,743 - -0.1 131,749 + -1.5 131,772 + -0.3 131,849 - -0.1 131,881 - BACOVA_03062 0.11 -0.6 131,881 - BACOVA_03062 0.11 +0.2 131,897 + BACOVA_03062 0.12 +0.8 131,897 + BACOVA_03062 0.12 +0.2 131,897 + BACOVA_03062 0.12 +0.5 131,909 + BACOVA_03062 0.13 +0.2 131,910 - BACOVA_03062 0.13 -0.4 131,910 - BACOVA_03062 0.13 -1.5 131,948 + BACOVA_03062 0.15 +0.4 131,948 + BACOVA_03062 0.15 -0.1 131,948 + BACOVA_03062 0.15 +0.5 131,949 - BACOVA_03062 0.15 -0.1 132,007 + BACOVA_03062 0.18 +0.6 132,008 - BACOVA_03062 0.18 -0.4 132,030 - BACOVA_03062 0.19 +0.6 132,076 - BACOVA_03062 0.22 +0.5 132,076 - BACOVA_03062 0.22 -1.2 132,080 - BACOVA_03062 0.22 -0.8 132,083 - BACOVA_03062 0.22 -1.6 132,083 - BACOVA_03062 0.22 +0.2 132,095 + BACOVA_03062 0.23 -0.7 132,102 - BACOVA_03062 0.23 -0.8 132,115 + BACOVA_03062 0.24 +0.8 132,118 + BACOVA_03062 0.24 -0.3 132,118 + BACOVA_03062 0.24 +0.4 132,119 - BACOVA_03062 0.24 -0.5 132,119 - BACOVA_03062 0.24 -1.5 132,121 + BACOVA_03062 0.24 +0.3 132,157 + BACOVA_03062 0.26 +1.8 132,157 + BACOVA_03062 0.26 -1.0 132,157 + BACOVA_03062 0.26 +0.4 132,158 - BACOVA_03062 0.26 -0.2 132,177 - BACOVA_03062 0.27 -0.5 132,177 - BACOVA_03062 0.27 +0.1 132,178 + BACOVA_03062 0.27 +0.6 132,184 + BACOVA_03062 0.28 -1.1 132,184 + BACOVA_03062 0.28 -0.3 132,204 - BACOVA_03062 0.29 +0.3 132,212 + BACOVA_03062 0.29 +1.2 132,215 + BACOVA_03062 0.29 +0.1 132,215 + BACOVA_03062 0.29 -1.4 132,216 - BACOVA_03062 0.30 -0.8 132,216 - BACOVA_03062 0.30 -0.6 132,217 + BACOVA_03062 0.30 -1.2 132,218 - BACOVA_03062 0.30 -0.3 132,218 - BACOVA_03062 0.30 -1.6 132,219 + BACOVA_03062 0.30 -2.3 132,219 + BACOVA_03062 0.30 +0.4 132,303 - BACOVA_03062 0.34 +0.9 132,364 + BACOVA_03062 0.38 -0.0 132,365 - BACOVA_03062 0.38 +0.0 132,365 - BACOVA_03062 0.38 -1.7 132,365 - BACOVA_03062 0.38 -0.1 132,365 - BACOVA_03062 0.38 -0.5 132,365 - BACOVA_03062 0.38 -0.8 132,373 - BACOVA_03062 0.38 -0.9 132,394 + BACOVA_03062 0.39 +0.8 132,419 + BACOVA_03062 0.41 +0.4 132,465 + BACOVA_03062 0.43 +1.0 132,469 + BACOVA_03062 0.43 +0.6 132,470 - BACOVA_03062 0.43 -1.5 132,470 - BACOVA_03062 0.43 +1.1 132,470 - BACOVA_03062 0.43 +0.9 132,470 - BACOVA_03062 0.43 +0.2 132,480 + BACOVA_03062 0.44 +0.1 132,504 - BACOVA_03062 0.45 +0.2 132,527 + BACOVA_03062 0.46 -1.0 132,572 + BACOVA_03062 0.49 -0.2 132,572 + BACOVA_03062 0.49 +0.5 132,580 - BACOVA_03062 0.49 +0.3
Or see this region's nucleotide sequence