Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02434 and BACOVA_02436 are separated by 139 nucleotides BACOVA_02436 and BACOVA_02437 are separated by 81 nucleotides BACOVA_02437 and BACOVA_02438 are separated by 23 nucleotides
BACOVA_02434: BACOVA_02434 - NAD dependent epimerase/dehydratase family protein, at 198,931 to 199,938
_02434
BACOVA_02436: BACOVA_02436 - hypothetical protein, at 200,078 to 200,626
_02436
BACOVA_02437: BACOVA_02437 - hypothetical protein, at 200,708 to 201,481
_02437
BACOVA_02438: BACOVA_02438 - response regulator receiver domain protein, at 201,505 to 202,200
_02438
Position (kb) 200
201 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 199.118 kb on - strand, within BACOVA_02434 at 199.160 kb on + strand, within BACOVA_02434 at 199.160 kb on + strand, within BACOVA_02434 at 199.161 kb on - strand, within BACOVA_02434 at 199.170 kb on + strand, within BACOVA_02434 at 199.189 kb on - strand, within BACOVA_02434 at 199.201 kb on + strand, within BACOVA_02434 at 199.311 kb on - strand, within BACOVA_02434 at 199.383 kb on + strand, within BACOVA_02434 at 199.383 kb on + strand, within BACOVA_02434 at 199.383 kb on + strand, within BACOVA_02434 at 199.387 kb on + strand, within BACOVA_02434 at 199.387 kb on + strand, within BACOVA_02434 at 199.390 kb on - strand, within BACOVA_02434 at 199.425 kb on + strand, within BACOVA_02434 at 199.602 kb on + strand, within BACOVA_02434 at 199.603 kb on - strand, within BACOVA_02434 at 199.603 kb on - strand, within BACOVA_02434 at 199.671 kb on - strand, within BACOVA_02434 at 199.758 kb on + strand, within BACOVA_02434 at 199.770 kb on - strand, within BACOVA_02434 at 199.791 kb on + strand, within BACOVA_02434 at 199.792 kb on - strand, within BACOVA_02434 at 199.792 kb on - strand, within BACOVA_02434 at 199.792 kb on - strand, within BACOVA_02434 at 199.800 kb on + strand, within BACOVA_02434 at 199.800 kb on + strand, within BACOVA_02434 at 199.800 kb on + strand, within BACOVA_02434 at 199.832 kb on + strand, within BACOVA_02434 at 199.837 kb on + strand, within BACOVA_02434 at 199.838 kb on - strand at 199.899 kb on + strand at 199.900 kb on - strand at 199.973 kb on - strand at 200.052 kb on - strand at 200.052 kb on - strand at 200.057 kb on + strand at 200.057 kb on + strand at 200.073 kb on - strand at 200.080 kb on - strand at 200.082 kb on + strand at 200.186 kb on - strand, within BACOVA_02436 at 200.197 kb on + strand, within BACOVA_02436 at 200.233 kb on - strand, within BACOVA_02436 at 200.236 kb on + strand, within BACOVA_02436 at 200.237 kb on - strand, within BACOVA_02436 at 200.282 kb on - strand, within BACOVA_02436 at 200.382 kb on + strand, within BACOVA_02436 at 200.383 kb on - strand, within BACOVA_02436 at 200.383 kb on - strand, within BACOVA_02436 at 200.386 kb on + strand, within BACOVA_02436 at 200.386 kb on + strand, within BACOVA_02436 at 200.389 kb on + strand, within BACOVA_02436 at 200.389 kb on + strand, within BACOVA_02436 at 200.434 kb on + strand, within BACOVA_02436 at 200.440 kb on + strand, within BACOVA_02436 at 200.441 kb on - strand, within BACOVA_02436 at 200.445 kb on - strand, within BACOVA_02436 at 200.450 kb on - strand, within BACOVA_02436 at 200.474 kb on + strand, within BACOVA_02436 at 200.474 kb on + strand, within BACOVA_02436 at 200.521 kb on + strand, within BACOVA_02436 at 200.528 kb on - strand, within BACOVA_02436 at 200.545 kb on + strand, within BACOVA_02436 at 200.591 kb on + strand at 200.592 kb on - strand at 200.594 kb on + strand at 200.633 kb on - strand at 200.659 kb on + strand at 200.722 kb on + strand at 200.723 kb on - strand at 200.775 kb on + strand at 200.775 kb on + strand at 200.776 kb on - strand at 200.788 kb on + strand, within BACOVA_02437 at 200.789 kb on - strand, within BACOVA_02437 at 200.809 kb on - strand, within BACOVA_02437 at 200.857 kb on - strand, within BACOVA_02437 at 200.860 kb on + strand, within BACOVA_02437 at 200.861 kb on - strand, within BACOVA_02437 at 200.966 kb on - strand, within BACOVA_02437 at 201.012 kb on + strand, within BACOVA_02437 at 201.067 kb on + strand, within BACOVA_02437 at 201.067 kb on + strand, within BACOVA_02437 at 201.068 kb on - strand, within BACOVA_02437 at 201.080 kb on + strand, within BACOVA_02437 at 201.080 kb on + strand, within BACOVA_02437 at 201.081 kb on - strand, within BACOVA_02437 at 201.108 kb on + strand, within BACOVA_02437 at 201.113 kb on - strand, within BACOVA_02437 at 201.115 kb on + strand, within BACOVA_02437 at 201.124 kb on + strand, within BACOVA_02437 at 201.125 kb on - strand, within BACOVA_02437 at 201.134 kb on + strand, within BACOVA_02437 at 201.135 kb on - strand, within BACOVA_02437 at 201.135 kb on - strand, within BACOVA_02437 at 201.135 kb on - strand, within BACOVA_02437 at 201.139 kb on - strand, within BACOVA_02437 at 201.220 kb on + strand, within BACOVA_02437 at 201.232 kb on + strand, within BACOVA_02437 at 201.232 kb on + strand, within BACOVA_02437 at 201.239 kb on - strand, within BACOVA_02437 at 201.254 kb on + strand, within BACOVA_02437 at 201.256 kb on + strand, within BACOVA_02437 at 201.256 kb on + strand, within BACOVA_02437 at 201.256 kb on + strand, within BACOVA_02437 at 201.257 kb on - strand, within BACOVA_02437 at 201.257 kb on - strand, within BACOVA_02437 at 201.257 kb on - strand, within BACOVA_02437 at 201.308 kb on + strand, within BACOVA_02437 at 201.310 kb on + strand, within BACOVA_02437 at 201.350 kb on + strand, within BACOVA_02437 at 201.434 kb on - strand at 201.506 kb on + strand at 201.523 kb on - strand at 201.549 kb on + strand at 201.549 kb on + strand at 201.553 kb on + strand at 201.554 kb on - strand at 201.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C) remove 199,118 - BACOVA_02434 0.19 -2.7 199,160 + BACOVA_02434 0.23 -0.4 199,160 + BACOVA_02434 0.23 -1.4 199,161 - BACOVA_02434 0.23 -1.5 199,170 + BACOVA_02434 0.24 -1.1 199,189 - BACOVA_02434 0.26 -1.1 199,201 + BACOVA_02434 0.27 -2.2 199,311 - BACOVA_02434 0.38 -1.2 199,383 + BACOVA_02434 0.45 -3.9 199,383 + BACOVA_02434 0.45 -0.6 199,383 + BACOVA_02434 0.45 +0.1 199,387 + BACOVA_02434 0.45 -0.2 199,387 + BACOVA_02434 0.45 -0.2 199,390 - BACOVA_02434 0.46 -2.1 199,425 + BACOVA_02434 0.49 -2.2 199,602 + BACOVA_02434 0.67 -2.4 199,603 - BACOVA_02434 0.67 -1.6 199,603 - BACOVA_02434 0.67 +0.0 199,671 - BACOVA_02434 0.73 -1.2 199,758 + BACOVA_02434 0.82 -2.7 199,770 - BACOVA_02434 0.83 -1.0 199,791 + BACOVA_02434 0.85 -1.8 199,792 - BACOVA_02434 0.85 -1.5 199,792 - BACOVA_02434 0.85 -1.9 199,792 - BACOVA_02434 0.85 -0.4 199,800 + BACOVA_02434 0.86 -3.1 199,800 + BACOVA_02434 0.86 -0.9 199,800 + BACOVA_02434 0.86 -1.5 199,832 + BACOVA_02434 0.89 -1.7 199,837 + BACOVA_02434 0.90 -1.9 199,838 - -0.6 199,899 + -0.5 199,900 - -2.6 199,973 - +1.9 200,052 - -0.2 200,052 - +0.4 200,057 + -0.9 200,057 + -1.1 200,073 - -1.5 200,080 - -0.2 200,082 + -0.2 200,186 - BACOVA_02436 0.20 -0.4 200,197 + BACOVA_02436 0.22 -0.1 200,233 - BACOVA_02436 0.28 +0.0 200,236 + BACOVA_02436 0.29 +0.7 200,237 - BACOVA_02436 0.29 -0.1 200,282 - BACOVA_02436 0.37 -1.1 200,382 + BACOVA_02436 0.55 +0.5 200,383 - BACOVA_02436 0.56 +0.2 200,383 - BACOVA_02436 0.56 +2.3 200,386 + BACOVA_02436 0.56 -0.3 200,386 + BACOVA_02436 0.56 +0.6 200,389 + BACOVA_02436 0.57 -0.6 200,389 + BACOVA_02436 0.57 +0.4 200,434 + BACOVA_02436 0.65 -1.2 200,440 + BACOVA_02436 0.66 -1.3 200,441 - BACOVA_02436 0.66 +0.6 200,445 - BACOVA_02436 0.67 -0.1 200,450 - BACOVA_02436 0.68 +1.5 200,474 + BACOVA_02436 0.72 +1.4 200,474 + BACOVA_02436 0.72 +0.6 200,521 + BACOVA_02436 0.81 +0.8 200,528 - BACOVA_02436 0.82 -0.9 200,545 + BACOVA_02436 0.85 -0.9 200,591 + -0.9 200,592 - +0.5 200,594 + +1.4 200,633 - +0.6 200,659 + -0.0 200,722 + +0.4 200,723 - -1.3 200,775 + -0.5 200,775 + -0.5 200,776 - -1.8 200,788 + BACOVA_02437 0.10 -0.2 200,789 - BACOVA_02437 0.10 +0.8 200,809 - BACOVA_02437 0.13 -0.6 200,857 - BACOVA_02437 0.19 +1.5 200,860 + BACOVA_02437 0.20 +0.7 200,861 - BACOVA_02437 0.20 +0.5 200,966 - BACOVA_02437 0.33 +1.9 201,012 + BACOVA_02437 0.39 -0.5 201,067 + BACOVA_02437 0.46 +0.4 201,067 + BACOVA_02437 0.46 +0.2 201,068 - BACOVA_02437 0.47 -0.1 201,080 + BACOVA_02437 0.48 -0.2 201,080 + BACOVA_02437 0.48 -0.1 201,081 - BACOVA_02437 0.48 -1.2 201,108 + BACOVA_02437 0.52 +1.7 201,113 - BACOVA_02437 0.52 -1.4 201,115 + BACOVA_02437 0.53 -1.2 201,124 + BACOVA_02437 0.54 -0.4 201,125 - BACOVA_02437 0.54 -0.3 201,134 + BACOVA_02437 0.55 -0.2 201,135 - BACOVA_02437 0.55 -0.7 201,135 - BACOVA_02437 0.55 +1.1 201,135 - BACOVA_02437 0.55 +0.2 201,139 - BACOVA_02437 0.56 +0.2 201,220 + BACOVA_02437 0.66 +0.1 201,232 + BACOVA_02437 0.68 -0.9 201,232 + BACOVA_02437 0.68 -1.1 201,239 - BACOVA_02437 0.69 +0.2 201,254 + BACOVA_02437 0.71 +0.1 201,256 + BACOVA_02437 0.71 -1.5 201,256 + BACOVA_02437 0.71 +0.0 201,256 + BACOVA_02437 0.71 -0.8 201,257 - BACOVA_02437 0.71 -1.2 201,257 - BACOVA_02437 0.71 -1.4 201,257 - BACOVA_02437 0.71 -1.2 201,308 + BACOVA_02437 0.78 -1.8 201,310 + BACOVA_02437 0.78 -0.1 201,350 + BACOVA_02437 0.83 +0.0 201,434 - -2.1 201,506 + -0.3 201,523 - -0.6 201,549 + +0.8 201,549 + -0.6 201,553 + -0.2 201,554 - -2.2 201,554 - +1.5
Or see this region's nucleotide sequence