Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02434

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02433 and BACOVA_02435 are separated by 104 nucleotidesBACOVA_02435 and BACOVA_02434 overlap by 17 nucleotidesBACOVA_02434 and BACOVA_02436 are separated by 139 nucleotidesBACOVA_02436 and BACOVA_02437 are separated by 81 nucleotides BACOVA_02433: BACOVA_02433 - transcriptional regulator, AraC family, at 197,824 to 198,726 _02433 BACOVA_02435: BACOVA_02435 - hypothetical protein, at 198,831 to 198,947 _02435 BACOVA_02434: BACOVA_02434 - NAD dependent epimerase/dehydratase family protein, at 198,931 to 199,938 _02434 BACOVA_02436: BACOVA_02436 - hypothetical protein, at 200,078 to 200,626 _02436 BACOVA_02437: BACOVA_02437 - hypothetical protein, at 200,708 to 201,481 _02437 Position (kb) 198 199 200Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 197.974 kb on - strand, within BACOVA_02433at 197.990 kb on + strand, within BACOVA_02433at 197.991 kb on - strand, within BACOVA_02433at 198.131 kb on - strand, within BACOVA_02433at 198.145 kb on - strand, within BACOVA_02433at 198.151 kb on + strand, within BACOVA_02433at 198.152 kb on - strand, within BACOVA_02433at 198.153 kb on + strand, within BACOVA_02433at 198.153 kb on + strand, within BACOVA_02433at 198.178 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.205 kb on - strand, within BACOVA_02433at 198.210 kb on - strand, within BACOVA_02433at 198.217 kb on + strand, within BACOVA_02433at 198.241 kb on - strand, within BACOVA_02433at 198.267 kb on + strand, within BACOVA_02433at 198.268 kb on - strand, within BACOVA_02433at 198.295 kb on + strand, within BACOVA_02433at 198.296 kb on - strand, within BACOVA_02433at 198.356 kb on + strand, within BACOVA_02433at 198.391 kb on + strand, within BACOVA_02433at 198.425 kb on - strand, within BACOVA_02433at 198.425 kb on - strand, within BACOVA_02433at 198.600 kb on + strand, within BACOVA_02433at 198.606 kb on + strand, within BACOVA_02433at 198.609 kb on - strand, within BACOVA_02433at 198.624 kb on + strand, within BACOVA_02433at 198.643 kb on + strandat 198.644 kb on - strandat 198.648 kb on + strandat 198.652 kb on + strandat 198.716 kb on - strandat 198.737 kb on - strandat 198.755 kb on + strandat 198.756 kb on - strandat 198.771 kb on - strandat 198.800 kb on - strandat 198.827 kb on + strandat 198.829 kb on + strandat 198.836 kb on + strandat 198.898 kb on - strand, within BACOVA_02435at 198.898 kb on - strand, within BACOVA_02435at 198.914 kb on - strand, within BACOVA_02435at 198.915 kb on + strand, within BACOVA_02435at 198.930 kb on + strand, within BACOVA_02435at 198.941 kb on + strandat 198.961 kb on - strandat 198.964 kb on - strandat 198.969 kb on + strandat 198.978 kb on - strandat 199.012 kb on - strandat 199.118 kb on - strand, within BACOVA_02434at 199.160 kb on + strand, within BACOVA_02434at 199.160 kb on + strand, within BACOVA_02434at 199.161 kb on - strand, within BACOVA_02434at 199.170 kb on + strand, within BACOVA_02434at 199.189 kb on - strand, within BACOVA_02434at 199.201 kb on + strand, within BACOVA_02434at 199.311 kb on - strand, within BACOVA_02434at 199.383 kb on + strand, within BACOVA_02434at 199.383 kb on + strand, within BACOVA_02434at 199.383 kb on + strand, within BACOVA_02434at 199.387 kb on + strand, within BACOVA_02434at 199.387 kb on + strand, within BACOVA_02434at 199.390 kb on - strand, within BACOVA_02434at 199.425 kb on + strand, within BACOVA_02434at 199.602 kb on + strand, within BACOVA_02434at 199.603 kb on - strand, within BACOVA_02434at 199.603 kb on - strand, within BACOVA_02434at 199.671 kb on - strand, within BACOVA_02434at 199.758 kb on + strand, within BACOVA_02434at 199.770 kb on - strand, within BACOVA_02434at 199.791 kb on + strand, within BACOVA_02434at 199.792 kb on - strand, within BACOVA_02434at 199.792 kb on - strand, within BACOVA_02434at 199.792 kb on - strand, within BACOVA_02434at 199.800 kb on + strand, within BACOVA_02434at 199.800 kb on + strand, within BACOVA_02434at 199.800 kb on + strand, within BACOVA_02434at 199.832 kb on + strand, within BACOVA_02434at 199.837 kb on + strand, within BACOVA_02434at 199.838 kb on - strandat 199.899 kb on + strandat 199.900 kb on - strandat 199.973 kb on - strandat 200.052 kb on - strandat 200.052 kb on - strandat 200.057 kb on + strandat 200.057 kb on + strandat 200.073 kb on - strandat 200.080 kb on - strandat 200.082 kb on + strandat 200.186 kb on - strand, within BACOVA_02436at 200.197 kb on + strand, within BACOVA_02436at 200.233 kb on - strand, within BACOVA_02436at 200.236 kb on + strand, within BACOVA_02436at 200.237 kb on - strand, within BACOVA_02436at 200.282 kb on - strand, within BACOVA_02436at 200.382 kb on + strand, within BACOVA_02436at 200.383 kb on - strand, within BACOVA_02436at 200.383 kb on - strand, within BACOVA_02436at 200.386 kb on + strand, within BACOVA_02436at 200.386 kb on + strand, within BACOVA_02436at 200.389 kb on + strand, within BACOVA_02436at 200.389 kb on + strand, within BACOVA_02436at 200.434 kb on + strand, within BACOVA_02436at 200.440 kb on + strand, within BACOVA_02436at 200.441 kb on - strand, within BACOVA_02436at 200.445 kb on - strand, within BACOVA_02436at 200.450 kb on - strand, within BACOVA_02436at 200.474 kb on + strand, within BACOVA_02436at 200.474 kb on + strand, within BACOVA_02436at 200.521 kb on + strand, within BACOVA_02436at 200.528 kb on - strand, within BACOVA_02436at 200.545 kb on + strand, within BACOVA_02436at 200.591 kb on + strandat 200.592 kb on - strandat 200.594 kb on + strandat 200.633 kb on - strandat 200.659 kb on + strandat 200.722 kb on + strandat 200.723 kb on - strandat 200.775 kb on + strandat 200.775 kb on + strandat 200.776 kb on - strandat 200.788 kb on + strand, within BACOVA_02437at 200.789 kb on - strand, within BACOVA_02437at 200.809 kb on - strand, within BACOVA_02437at 200.857 kb on - strand, within BACOVA_02437at 200.860 kb on + strand, within BACOVA_02437at 200.861 kb on - strand, within BACOVA_02437

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/mL (C)
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197,974 - BACOVA_02433 0.17 -1.1
197,990 + BACOVA_02433 0.18 -0.6
197,991 - BACOVA_02433 0.18 -0.3
198,131 - BACOVA_02433 0.34 -0.5
198,145 - BACOVA_02433 0.36 -0.8
198,151 + BACOVA_02433 0.36 -1.9
198,152 - BACOVA_02433 0.36 -1.6
198,153 + BACOVA_02433 0.36 +0.5
198,153 + BACOVA_02433 0.36 -0.8
198,178 - BACOVA_02433 0.39 -0.7
198,205 - BACOVA_02433 0.42 +0.1
198,205 - BACOVA_02433 0.42 +0.9
198,205 - BACOVA_02433 0.42 -0.5
198,210 - BACOVA_02433 0.43 +0.0
198,217 + BACOVA_02433 0.44 -0.9
198,241 - BACOVA_02433 0.46 +0.1
198,267 + BACOVA_02433 0.49 -1.2
198,268 - BACOVA_02433 0.49 +0.4
198,295 + BACOVA_02433 0.52 +0.5
198,296 - BACOVA_02433 0.52 -0.5
198,356 + BACOVA_02433 0.59 -0.2
198,391 + BACOVA_02433 0.63 +0.1
198,425 - BACOVA_02433 0.67 -0.1
198,425 - BACOVA_02433 0.67 -0.9
198,600 + BACOVA_02433 0.86 +0.0
198,606 + BACOVA_02433 0.87 +1.4
198,609 - BACOVA_02433 0.87 +0.3
198,624 + BACOVA_02433 0.89 -0.5
198,643 + -0.6
198,644 - +0.4
198,648 + +0.6
198,652 + +0.8
198,716 - +2.1
198,737 - -0.2
198,755 + +0.9
198,756 - -1.7
198,771 - -0.3
198,800 - -0.3
198,827 + -0.1
198,829 + -0.2
198,836 + +0.4
198,898 - BACOVA_02435 0.57 -0.6
198,898 - BACOVA_02435 0.57 -1.2
198,914 - BACOVA_02435 0.71 -1.5
198,915 + BACOVA_02435 0.72 +1.2
198,930 + BACOVA_02435 0.85 -1.0
198,941 + -2.2
198,961 - -1.2
198,964 - -0.6
198,969 + -0.6
198,978 - -2.0
199,012 - -1.6
199,118 - BACOVA_02434 0.19 -2.7
199,160 + BACOVA_02434 0.23 -0.4
199,160 + BACOVA_02434 0.23 -1.4
199,161 - BACOVA_02434 0.23 -1.5
199,170 + BACOVA_02434 0.24 -1.1
199,189 - BACOVA_02434 0.26 -1.1
199,201 + BACOVA_02434 0.27 -2.2
199,311 - BACOVA_02434 0.38 -1.2
199,383 + BACOVA_02434 0.45 -3.9
199,383 + BACOVA_02434 0.45 -0.6
199,383 + BACOVA_02434 0.45 +0.1
199,387 + BACOVA_02434 0.45 -0.2
199,387 + BACOVA_02434 0.45 -0.2
199,390 - BACOVA_02434 0.46 -2.1
199,425 + BACOVA_02434 0.49 -2.2
199,602 + BACOVA_02434 0.67 -2.4
199,603 - BACOVA_02434 0.67 -1.6
199,603 - BACOVA_02434 0.67 +0.0
199,671 - BACOVA_02434 0.73 -1.2
199,758 + BACOVA_02434 0.82 -2.7
199,770 - BACOVA_02434 0.83 -1.0
199,791 + BACOVA_02434 0.85 -1.8
199,792 - BACOVA_02434 0.85 -1.5
199,792 - BACOVA_02434 0.85 -1.9
199,792 - BACOVA_02434 0.85 -0.4
199,800 + BACOVA_02434 0.86 -3.1
199,800 + BACOVA_02434 0.86 -0.9
199,800 + BACOVA_02434 0.86 -1.5
199,832 + BACOVA_02434 0.89 -1.7
199,837 + BACOVA_02434 0.90 -1.9
199,838 - -0.6
199,899 + -0.5
199,900 - -2.6
199,973 - +1.9
200,052 - -0.2
200,052 - +0.4
200,057 + -0.9
200,057 + -1.1
200,073 - -1.5
200,080 - -0.2
200,082 + -0.2
200,186 - BACOVA_02436 0.20 -0.4
200,197 + BACOVA_02436 0.22 -0.1
200,233 - BACOVA_02436 0.28 +0.0
200,236 + BACOVA_02436 0.29 +0.7
200,237 - BACOVA_02436 0.29 -0.1
200,282 - BACOVA_02436 0.37 -1.1
200,382 + BACOVA_02436 0.55 +0.5
200,383 - BACOVA_02436 0.56 +0.2
200,383 - BACOVA_02436 0.56 +2.3
200,386 + BACOVA_02436 0.56 -0.3
200,386 + BACOVA_02436 0.56 +0.6
200,389 + BACOVA_02436 0.57 -0.6
200,389 + BACOVA_02436 0.57 +0.4
200,434 + BACOVA_02436 0.65 -1.2
200,440 + BACOVA_02436 0.66 -1.3
200,441 - BACOVA_02436 0.66 +0.6
200,445 - BACOVA_02436 0.67 -0.1
200,450 - BACOVA_02436 0.68 +1.5
200,474 + BACOVA_02436 0.72 +1.4
200,474 + BACOVA_02436 0.72 +0.6
200,521 + BACOVA_02436 0.81 +0.8
200,528 - BACOVA_02436 0.82 -0.9
200,545 + BACOVA_02436 0.85 -0.9
200,591 + -0.9
200,592 - +0.5
200,594 + +1.4
200,633 - +0.6
200,659 + -0.0
200,722 + +0.4
200,723 - -1.3
200,775 + -0.5
200,775 + -0.5
200,776 - -1.8
200,788 + BACOVA_02437 0.10 -0.2
200,789 - BACOVA_02437 0.10 +0.8
200,809 - BACOVA_02437 0.13 -0.6
200,857 - BACOVA_02437 0.19 +1.5
200,860 + BACOVA_02437 0.20 +0.7
200,861 - BACOVA_02437 0.20 +0.5

Or see this region's nucleotide sequence